Analysis of interatomic Contacts of Structural Units in PDB entry:
5H45


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H45 entry

There are 2 chains in PDB entry 5H45 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 272ALA 423
B
 LYS 267ALA 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5H45. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
312 326Right-handed alpha
Helix 2
AA2
A
348 350Right-handed 310
Helix 3
AA3
A
351 365Right-handed alpha
Helix 4
AA4
A
389 400Right-handed alpha
Helix 5
AA5
A
413 422Right-handed alpha
Helix 6
AA6
B
312 328Right-handed alpha
Helix 7
AA7
B
348 350Right-handed 310
Helix 8
AA8
B
351 365Right-handed alpha
Helix 9
AA9
B
389 400Right-handed alpha
Helix 10
AB1
B
413 422Right-handed alpha
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There are 4 sheets in PDB entry 5H45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
334 340parallel
Strand 3
A
286 298anti-parallel
Strand 4
A
276 283anti-parallel
Strand 5
A
372 374parallel
Strand 6
A
404 406parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
384 385anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 309first strand
Strand 2
B
334 340parallel
Strand 3
B
286 298anti-parallel
Strand 4
B
276 283anti-parallel
Strand 5
B
372 374parallel
Strand 6
B
404 406parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 378first strand
Strand 2
B
384 385anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il