Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H4D entry

There are 4 chains in PDB entry 5H4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 121THR 391
D
 ARG 1LYS 3
H
 GLY 121THR 391
C
 ARG 1LYS 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5H4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 134Right-handed alpha
Helix 2
AA2
A
146 153Right-handed 310
Helix 3
AA3
A
164 170Right-handed alpha
Helix 4
AA4
A
175 180Right-handed 310
Helix 5
AA5
A
181 188Right-handed alpha
Helix 6
AA6
A
189 200Right-handed alpha
Helix 7
AA7
A
207 219Right-handed alpha
Helix 8
AA8
A
232 237Right-handed alpha
Helix 9
AA9
A
266 273Right-handed alpha
Helix 10
AB1
A
299 303Right-handed 310
Helix 11
AB2
A
304 309Right-handed alpha
Helix 12
AB3
A
328 332Right-handed 310
Helix 13
AB4
A
348 352Right-handed 310
Helix 14
AB5
A
365 378Right-handed alpha
Helix 15
AB6
A
379 391Right-handed alpha
Helix 16
AB7
H
125 134Right-handed alpha
Helix 17
AB8
H
162 171Right-handed alpha
Helix 18
AB9
H
175 180Right-handed 310
Helix 19
AC1
H
181 186Right-handed alpha
Helix 20
AC2
H
189 200Right-handed alpha
Helix 21
AC3
H
207 219Right-handed alpha
Helix 22
AC4
H
232 237Right-handed alpha
Helix 23
AC5
H
240 242Right-handed 310
Helix 24
AC6
H
268 274Right-handed alpha
Helix 25
AC7
H
299 303Right-handed 310
Helix 26
AC8
H
304 309Right-handed alpha
Helix 27
AC9
H
329 334Right-handed alpha
Helix 28
AD1
H
349 354Right-handed alpha
Helix 29
AD2
H
366 378Right-handed alpha
Helix 30
AD3
H
379 390Right-handed alpha
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There are 5 sheets in PDB entry 5H4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
222 227parallel
Strand 3
A
140 144parallel
Strand 4
A
315 318parallel
Strand 5
A
340 344parallel
Strand 6
A
359 363parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
287 291anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
H
296 297anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
244 246first strand
Strand 2
H
222 227parallel
Strand 3
H
140 144parallel
Strand 4
H
314 318parallel
Strand 5
H
340 344parallel
Strand 6
H
360 363parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
262 264first strand
Strand 2
H
249 256anti-parallel
Strand 3
H
287 291anti-parallel
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