Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H4E entry

There is 1 chain in PDB entry 5H4E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 219TRP 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5H4E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 242Right-handed 310
Helix 2
AA2
A
271 276Right-handed 310
Helix 3
AA3
A
399 411Right-handed alpha
Helix 4
AA4
A
412 417Right-handed alpha
Helix 5
AA5
A
444 455Right-handed alpha
Helix 6
AA6
A
496 503Right-handed alpha
Helix 7
AA7
A
504 508Right-handed 310
Helix 8
AA8
A
511 527Right-handed alpha
Helix 9
AA9
A
532 536Right-handed 310
Helix 10
AB1
A
538 542Right-handed 310
Helix 11
AB2
A
549 558Right-handed alpha
Helix 12
AB3
A
559 563Right-handed 310
Helix 13
AB4
A
571 575Right-handed 310
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There are 7 sheets in PDB entry 5H4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
227 234anti-parallel
Strand 3
A
584 592parallel
Strand 4
A
380 386anti-parallel
Strand 5
A
391 395anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
258 261anti-parallel
Strand 3
A
244 251anti-parallel
Strand 4
A
297 298anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
258 261anti-parallel
Strand 3
A
244 251anti-parallel
Strand 4
A
310 319anti-parallel
Strand 5
A
354 362anti-parallel
Strand 6
A
365 369anti-parallel
Strand 7
A
579 581anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 285first strand
Strand 2
A
288 292anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
335 338anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
424 425anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 464first strand
Strand 2
A
467 474anti-parallel
Strand 3
A
477 482anti-parallel
Strand 4
A
489 491anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il