Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H4R entry

There is 1 chain in PDB entry 5H4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 22ARG 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5H4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 48Right-handed alpha
Helix 2
AA2
A
68 70Right-handed 310
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
82 92Right-handed alpha
Helix 5
AA5
A
103 105Right-handed 310
Helix 6
AA6
A
115 132Right-handed alpha
Helix 7
AA7
A
152 154Right-handed 310
Helix 8
AA8
A
155 174Right-handed alpha
Helix 9
AA9
A
204 227Right-handed alpha
Helix 10
AB1
A
228 234Right-handed 310
Helix 11
AB2
A
242 245Right-handed 310
Helix 12
AB3
A
246 251Right-handed alpha
Helix 13
AB4
A
276 281Right-handed alpha
Helix 14
AB5
A
297 315Right-handed alpha
Helix 15
AB6
A
316 319Right-handed 310
Helix 16
AB7
A
335 353Right-handed alpha
Helix 17
AB8
A
384 396Right-handed alpha
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There are 2 sheets in PDB entry 5H4R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
96 99parallel
Strand 3
A
135 139parallel
Strand 4
A
181 184parallel
Strand 5
A
237 240parallel
Strand 6
A
267 272parallel
Strand 7
A
322 327parallel
Strand 8
A
356 361parallel
Strand 9
A
50 53parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il