Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H4V entry

There are 6 chains in PDB entry 5H4V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 466
B	ALA 2	ALA 466
C	ALA 2	ALA 466
D	ALA 2	ALA 466
E	ALA 2	ALA 466
F	ALA 2	ALA 466

There are129 helices in PDB entry 5H4V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	33	Right-handed alpha
Helix 2	AA2	A	50	65	Right-handed alpha
Helix 3	AA3	A	78	92	Right-handed alpha
Helix 4	AA4	A	101	114	Right-handed alpha
Helix 5	AA5	A	180	192	Right-handed alpha
Helix 6	AA6	A	206	218	Right-handed alpha
Helix 7	AA7	A	246	254	Right-handed alpha
Helix 8	AA8	A	256	266	Right-handed alpha
Helix 9	AA9	A	278	286	Right-handed alpha
Helix 10	AB1	A	299	314	Right-handed alpha
Helix 11	AB2	A	315	330	Right-handed alpha
Helix 12	AB3	A	339	348	Right-handed alpha
Helix 13	AB4	A	353	366	Right-handed alpha
Helix 14	AB5	A	372	377	Right-handed alpha
Helix 15	AB6	A	384	396	Right-handed alpha
Helix 16	AB7	A	404	417	Right-handed alpha
Helix 17	AB8	A	420	434	Right-handed alpha
Helix 18	AB9	A	440	448	Right-handed alpha
Helix 19	AC1	A	448	465	Right-handed alpha
Helix 20	AC2	B	16	33	Right-handed alpha
Helix 21	AC3	B	50	65	Right-handed alpha
Helix 22	AC4	B	78	92	Right-handed alpha
Helix 23	AC5	B	101	115	Right-handed alpha
Helix 24	AC6	B	165	167	Right-handed 310
Helix 25	AC7	B	180	192	Right-handed alpha
Helix 26	AC8	B	202	205	Right-handed 310
Helix 27	AC9	B	206	218	Right-handed alpha
Helix 28	AD1	B	247	253	Right-handed alpha
Helix 29	AD2	B	256	266	Right-handed alpha
Helix 30	AD3	B	278	286	Right-handed alpha
Helix 31	AD4	B	287	291	Right-handed 310
Helix 32	AD5	B	299	314	Right-handed alpha
Helix 33	AD6	B	315	331	Right-handed alpha
Helix 34	AD7	B	339	348	Right-handed alpha
Helix 35	AD8	B	353	366	Right-handed alpha
Helix 36	AD9	B	372	380	Right-handed alpha
Helix 37	AE1	B	385	396	Right-handed alpha
Helix 38	AE2	B	402	416	Right-handed alpha
Helix 39	AE3	B	424	434	Right-handed alpha
Helix 40	AE4	B	440	449	Right-handed alpha
Helix 41	AE5	B	449	466	Right-handed alpha
Helix 42	AE6	C	16	33	Right-handed alpha
Helix 43	AE7	C	50	65	Right-handed alpha
Helix 44	AE8	C	75	92	Right-handed alpha
Helix 45	AE9	C	102	115	Right-handed alpha
Helix 46	AF1	C	180	192	Right-handed alpha
Helix 47	AF2	C	202	205	Right-handed 310
Helix 48	AF3	C	206	217	Right-handed alpha
Helix 49	AF4	C	247	254	Right-handed alpha
Helix 50	AF5	C	256	267	Right-handed alpha
Helix 51	AF6	C	278	286	Right-handed alpha
Helix 52	AF7	C	287	291	Right-handed 310
Helix 53	AF8	C	299	314	Right-handed alpha
Helix 54	AF9	C	315	329	Right-handed alpha
Helix 55	AG1	C	339	348	Right-handed alpha
Helix 56	AG2	C	353	366	Right-handed alpha
Helix 57	AG3	C	372	377	Right-handed alpha
Helix 58	AG4	C	381	395	Right-handed alpha
Helix 59	AG5	C	404	417	Right-handed alpha
Helix 60	AG6	C	424	434	Right-handed alpha
Helix 61	AG7	C	440	448	Right-handed alpha
Helix 62	AG8	C	450	463	Right-handed alpha
Helix 63	AG9	D	16	32	Right-handed alpha
Helix 64	AH1	D	50	64	Right-handed alpha
Helix 65	AH2	D	78	92	Right-handed alpha
Helix 66	AH3	D	101	115	Right-handed alpha
Helix 67	AH4	D	180	192	Right-handed alpha
Helix 68	AH5	D	202	205	Right-handed 310
Helix 69	AH6	D	206	217	Right-handed alpha
Helix 70	AH7	D	247	254	Right-handed alpha
Helix 71	AH8	D	256	266	Right-handed alpha
Helix 72	AH9	D	278	286	Right-handed alpha
Helix 73	AI1	D	299	314	Right-handed alpha
Helix 74	AI2	D	315	329	Right-handed alpha
Helix 75	AI3	D	339	348	Right-handed alpha
Helix 76	AI4	D	353	366	Right-handed alpha
Helix 77	AI5	D	373	379	Right-handed 310
Helix 78	AI6	D	381	383	Right-handed 310
Helix 79	AI7	D	384	394	Right-handed alpha
Helix 80	AI8	D	405	411	Right-handed 310
Helix 81	AI9	D	421	433	Right-handed alpha
Helix 82	AJ1	D	440	449	Right-handed alpha
Helix 83	AJ2	D	449	465	Right-handed alpha
Helix 84	AJ3	E	16	33	Right-handed alpha
Helix 85	AJ4	E	50	65	Right-handed alpha
Helix 86	AJ5	E	78	92	Right-handed alpha
Helix 87	AJ6	E	101	116	Right-handed alpha
Helix 88	AJ7	E	165	167	Right-handed 310
Helix 89	AJ8	E	180	193	Right-handed alpha
Helix 90	AJ9	E	202	205	Right-handed 310
Helix 91	AK1	E	206	218	Right-handed alpha
Helix 92	AK2	E	246	254	Right-handed alpha
Helix 93	AK3	E	256	266	Right-handed alpha
Helix 94	AK4	E	278	286	Right-handed alpha
Helix 95	AK5	E	287	291	Right-handed 310
Helix 96	AK6	E	299	314	Right-handed alpha
Helix 97	AK7	E	315	331	Right-handed alpha
Helix 98	AK8	E	333	337	Right-handed 310
Helix 99	AK9	E	339	348	Right-handed alpha
Helix 100	AL1	E	353	361	Right-handed alpha
Helix 101	AL2	E	362	365	Right-handed 310
Helix 102	AL3	E	372	377	Right-handed alpha
Helix 103	AL4	E	385	394	Right-handed alpha
Helix 104	AL5	E	402	417	Right-handed alpha
Helix 105	AL6	E	420	434	Right-handed alpha
Helix 106	AL7	E	440	449	Right-handed alpha
Helix 107	AL8	E	449	466	Right-handed alpha
Helix 108	AL9	F	16	33	Right-handed alpha
Helix 109	AM1	F	50	65	Right-handed alpha
Helix 110	AM2	F	75	92	Right-handed alpha
Helix 111	AM3	F	101	115	Right-handed alpha
Helix 112	AM4	F	180	192	Right-handed alpha
Helix 113	AM5	F	202	204	Right-handed 310
Helix 114	AM6	F	205	218	Right-handed alpha
Helix 115	AM7	F	246	254	Right-handed alpha
Helix 116	AM8	F	256	266	Right-handed alpha
Helix 117	AM9	F	278	286	Right-handed alpha
Helix 118	AN1	F	287	291	Right-handed 310
Helix 119	AN2	F	299	314	Right-handed alpha
Helix 120	AN3	F	315	329	Right-handed alpha
Helix 121	AN4	F	330	332	Right-handed 310
Helix 122	AN5	F	339	348	Right-handed alpha
Helix 123	AN6	F	353	366	Right-handed alpha
Helix 124	AN7	F	372	377	Right-handed alpha
Helix 125	AN8	F	384	397	Right-handed alpha
Helix 126	AN9	F	402	417	Right-handed alpha
Helix 127	AO1	F	420	434	Right-handed alpha
Helix 128	AO2	F	440	447	Right-handed alpha
Helix 129	AO3	F	449	466	Right-handed alpha

There are 24 sheets in PDB entry 5H4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	36	41	parallel
Strand 3	A	70	74	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	139	142	anti-parallel
Strand 3	A	171	173	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	158	163	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	223	227	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	36	41	parallel
Strand 3	B	70	74	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	98	first strand
Strand 2	B	139	142	anti-parallel
Strand 3	B	171	173	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	154	first strand
Strand 2	B	158	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	223	227	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	36	41	parallel
Strand 3	C	70	74	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	140	142	anti-parallel
Strand 3	C	171	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	159	163	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	200	first strand
Strand 2	C	223	227	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	36	41	parallel
Strand 3	D	70	74	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	139	142	anti-parallel
Strand 3	D	171	173	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	158	163	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	200	first strand
Strand 2	D	223	227	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	36	41	parallel
Strand 3	E	70	74	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	139	142	anti-parallel
Strand 3	E	171	173	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	154	first strand
Strand 2	E	158	163	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	200	first strand
Strand 2	E	223	227	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	36	41	parallel
Strand 3	F	70	74	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	98	first strand
Strand 2	F	139	142	anti-parallel
Strand 3	F	171	173	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	154	first strand
Strand 2	F	158	163	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	196	200	first strand
Strand 2	F	223	227	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H4V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H4V