Analysis of interatomic Contacts of Structural Units in PDB entry:
5H53

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H53 entry

There are 7 chains in PDB entry 5H53 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 845
B	GLN 25	GLU 170
C	ILE 41	ASP 193
D	ASP 1	GLU 72
D	GLY 74	PHE 375
E	ASP 1	GLU 72
E	GLY 74	PHE 375

There are 86 helices in PDB entry 5H53. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	20	29	Right-handed alpha
Helix 3	AA3	A	82	86	Right-handed 310
Helix 4	AA4	A	90	94	Right-handed 310
Helix 5	AA5	A	98	112	Right-handed alpha
Helix 6	AA6	A	132	135	Right-handed 310
Helix 7	AA7	A	136	144	Right-handed alpha
Helix 8	AA8	A	154	170	Right-handed alpha
Helix 9	AA9	A	184	203	Right-handed alpha
Helix 10	AB1	A	219	233	Right-handed alpha
Helix 11	AB2	A	272	277	Right-handed alpha
Helix 12	AB3	A	285	293	Right-handed alpha
Helix 13	AB4	A	296	304	Right-handed alpha
Helix 14	AB5	A	308	311	Right-handed 310
Helix 15	AB6	A	312	317	Right-handed alpha
Helix 16	AB7	A	326	342	Right-handed alpha
Helix 17	AB8	A	344	364	Right-handed alpha
Helix 18	AB9	A	380	391	Right-handed alpha
Helix 19	AC1	A	393	403	Right-handed alpha
Helix 20	AC2	A	418	450	Right-handed alpha
Helix 21	AC3	A	474	507	Right-handed alpha
Helix 22	AC4	A	516	528	Right-handed alpha
Helix 23	AC5	A	531	542	Right-handed alpha
Helix 24	AC6	A	546	559	Right-handed alpha
Helix 25	AC7	A	594	600	Right-handed alpha
Helix 26	AC8	A	604	612	Right-handed alpha
Helix 27	AC9	A	615	624	Right-handed alpha
Helix 28	AD1	A	650	667	Right-handed alpha
Helix 29	AD2	A	689	701	Right-handed alpha
Helix 30	AD3	A	701	712	Right-handed alpha
Helix 31	AD4	A	719	727	Right-handed alpha
Helix 32	AD5	A	741	754	Right-handed alpha
Helix 33	AD6	A	756	760	Right-handed 310
Helix 34	AD7	A	772	831	Right-handed alpha
Helix 35	AD8	A	831	844	Right-handed alpha
Helix 36	AD9	B	27	39	Right-handed alpha
Helix 37	AE1	B	47	59	Right-handed alpha
Helix 38	AE2	B	65	74	Right-handed alpha
Helix 39	AE3	B	81	88	Right-handed alpha
Helix 40	AE4	B	89	95	Right-handed alpha
Helix 41	AE5	B	100	107	Right-handed alpha
Helix 42	AE6	B	117	127	Right-handed alpha
Helix 43	AE7	B	133	144	Right-handed alpha
Helix 44	AE8	B	153	161	Right-handed alpha
Helix 45	AE9	C	43	62	Right-handed alpha
Helix 46	AF1	C	69	74	Right-handed alpha
Helix 47	AF2	C	82	90	Right-handed alpha
Helix 48	AF3	C	104	118	Right-handed alpha
Helix 49	AF4	C	123	136	Right-handed alpha
Helix 50	AF5	C	143	154	Right-handed alpha
Helix 51	AF6	C	159	171	Right-handed alpha
Helix 52	AF7	C	178	189	Right-handed alpha
Helix 53	AF8	D	56	61	Right-handed alpha
Helix 54	AF9	D	78	91	Right-handed alpha
Helix 55	AG1	D	97	101	Right-handed 310
Helix 56	AG2	D	112	126	Right-handed alpha
Helix 57	AG3	D	137	146	Right-handed alpha
Helix 58	AG4	D	181	196	Right-handed alpha
Helix 59	AG5	D	202	217	Right-handed alpha
Helix 60	AG6	D	222	233	Right-handed alpha
Helix 61	AG7	D	251	263	Right-handed alpha
Helix 62	AG8	D	273	285	Right-handed alpha
Helix 63	AG9	D	286	296	Right-handed alpha
Helix 64	AH1	D	301	305	Right-handed 310
Helix 65	AH2	D	308	321	Right-handed alpha
Helix 66	AH3	D	337	348	Right-handed alpha
Helix 67	AH4	D	351	356	Right-handed 310
Helix 68	AH5	D	359	366	Right-handed alpha
Helix 69	AH6	D	367	372	Right-handed alpha
Helix 70	AH7	E	56	61	Right-handed alpha
Helix 71	AH8	E	78	92	Right-handed alpha
Helix 72	AH9	E	112	126	Right-handed alpha
Helix 73	AI1	E	137	146	Right-handed alpha
Helix 74	AI2	E	182	196	Right-handed alpha
Helix 75	AI3	E	202	217	Right-handed alpha
Helix 76	AI4	E	222	231	Right-handed alpha
Helix 77	AI5	E	252	257	Right-handed alpha
Helix 78	AI6	E	258	263	Right-handed alpha
Helix 79	AI7	E	273	285	Right-handed alpha
Helix 80	AI8	E	286	296	Right-handed alpha
Helix 81	AI9	E	301	305	Right-handed 310
Helix 82	AJ1	E	308	321	Right-handed alpha
Helix 83	AJ2	E	337	348	Right-handed alpha
Helix 84	AJ3	E	352	356	Right-handed 310
Helix 85	AJ4	E	359	366	Right-handed alpha
Helix 86	AJ5	E	367	372	Right-handed alpha

There are 14 sheets in PDB entry 5H53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	73	first strand
Strand 2	A	59	64	anti-parallel
Strand 3	A	46	55	anti-parallel
Strand 4	A	38	42	anti-parallel
Strand 5	A	77	79	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	122	125	anti-parallel
Strand 3	A	674	676	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	268	first strand
Strand 2	A	247	253	anti-parallel
Strand 3	A	458	459	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	268	first strand
Strand 2	A	247	253	anti-parallel
Strand 3	A	462	463	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	371	first strand
Strand 2	A	374	378	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	583	first strand
Strand 2	A	586	590	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	718	first strand
Strand 2	A	766	768	anti-parallel
Strand 3	A	761	762	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	16	21	anti-parallel
Strand 3	D	8	12	anti-parallel
Strand 4	D	103	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	176	178	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	160	166	anti-parallel
Strand 3	D	150	155	anti-parallel
Strand 4	D	297	300	parallel
Strand 5	D	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	247	249	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	16	21	anti-parallel
Strand 3	E	8	12	anti-parallel
Strand 4	E	103	107	parallel
Strand 5	E	131	136	parallel
Strand 6	E	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	160	166	anti-parallel
Strand 3	E	150	155	anti-parallel
Strand 4	E	297	300	parallel
Strand 5	E	329	330	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	241	first strand
Strand 2	E	247	249	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H53

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H53