Analysis of interatomic Contacts of Structural Units in PDB entry:
5H5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H5J entry

There are 3 chains in PDB entry 5H5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9TYR 317
B
 ALA 1TYR 97
C
 SER 9TYR 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5H5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
128 132Right-handed 310
Helix 3
AA3
A
133 141Right-handed alpha
Helix 4
AA4
A
178 189Right-handed alpha
Helix 5
AA5
A
210 214Right-handed 310
Helix 6
AA6
A
216 227Right-handed alpha
Helix 7
AA7
A
250 257Right-handed alpha
Helix 8
AA8
A
258 268Right-handed alpha
Helix 9
AA9
A
280 294Right-handed alpha
Helix 10
AB1
A
298 309Right-handed alpha
Helix 11
AB2
B
24 32Right-handed alpha
Helix 12
AB3
B
66 72Right-handed alpha
Helix 13
AB4
B
78 80Right-handed 310
Helix 14
AB5
B
92 96Right-handed 310
Helix 15
AB6
C
15 20Right-handed 310
Helix 16
AB7
C
129 132Right-handed 310
Helix 17
AB8
C
133 141Right-handed alpha
Helix 18
AB9
C
178 190Right-handed alpha
Helix 19
AC1
C
210 214Right-handed 310
Helix 20
AC2
C
216 227Right-handed alpha
Helix 21
AC3
C
250 257Right-handed alpha
Helix 22
AC4
C
258 268Right-handed alpha
Helix 23
AC5
C
279 294Right-handed alpha
Helix 24
AC6
C
298 309Right-handed alpha
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There are 9 sheets in PDB entry 5H5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
191 192parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
147 154anti-parallel
Strand 4
A
35 44anti-parallel
Strand 5
A
54 60anti-parallel
Strand 6
A
109 115anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 237first strand
Strand 2
A
201 208parallel
Strand 3
A
168 174parallel
Strand 4
A
271 277parallel
Strand 5
A
312 317parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 20first strand
Strand 2
B
2 8anti-parallel
Strand 3
B
86 89parallel
Strand 4
B
49 54anti-parallel
Strand 5
B
74 76anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
81 82anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 95first strand
Strand 2
C
72 76anti-parallel
Strand 3
C
147 154anti-parallel
Strand 4
C
35 44anti-parallel
Strand 5
C
54 60anti-parallel
Strand 6
C
109 115anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
C
84 88anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 120first strand
Strand 2
C
127 128anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 237first strand
Strand 2
C
201 208parallel
Strand 3
C
168 174parallel
Strand 4
C
271 277parallel
Strand 5
C
312 317parallel
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