Analysis of interatomic Contacts of Structural Units in PDB entry:
5H5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H5M entry

There are 2 chains in PDB entry 5H5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 270ASN 641
B
 GLY 270MET 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5H5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
270 283Right-handed alpha
Helix 2
AA2
A
291 315Right-handed alpha
Helix 3
AA3
A
320 346Right-handed alpha
Helix 4
AA4
A
357 388Right-handed alpha
Helix 5
AA5
A
392 403Right-handed alpha
Helix 6
AA6
A
406 432Right-handed alpha
Helix 7
AA7
A
433 435Right-handed 310
Helix 8
AA8
A
437 468Right-handed alpha
Helix 9
AA9
A
471 499Right-handed alpha
Helix 10
AB1
A
501 526Right-handed alpha
Helix 11
AB2
A
540 566Right-handed alpha
Helix 12
AB3
A
569 585Right-handed alpha
Helix 13
AB4
A
585 605Right-handed alpha
Helix 14
AB5
A
606 608Right-handed 310
Helix 15
AB6
A
609 640Right-handed alpha
Helix 16
AB7
B
271 283Right-handed alpha
Helix 17
AB8
B
291 296Right-handed alpha
Helix 18
AB9
B
296 315Right-handed alpha
Helix 19
AC1
B
320 346Right-handed alpha
Helix 20
AC2
B
357 388Right-handed alpha
Helix 21
AC3
B
392 404Right-handed alpha
Helix 22
AC4
B
406 432Right-handed alpha
Helix 23
AC5
B
433 435Right-handed 310
Helix 24
AC6
B
437 468Right-handed alpha
Helix 25
AC7
B
471 499Right-handed alpha
Helix 26
AC8
B
501 525Right-handed alpha
Helix 27
AC9
B
541 564Right-handed alpha
Helix 28
AD1
B
569 585Right-handed alpha
Helix 29
AD2
B
585 605Right-handed alpha
Helix 30
AD3
B
610 640Right-handed alpha
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There are no sheets in PDB entry 5H5M
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il