Analysis of interatomic Contacts of Structural Units in PDB entry:
5H5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H5V entry

There are 5 chains in PDB entry 5H5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 44	VAL 411
B	GLY 48	ASP 409
C	LYS 43	VAL 411
D	LYS 43	ASP 409
E	LEU 54	VAL 99

There are 68 helices in PDB entry 5H5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	65	Right-handed alpha
Helix 2	AA2	A	66	71	Right-handed 310
Helix 3	AA3	A	144	148	Right-handed 310
Helix 4	AA4	A	149	161	Right-handed alpha
Helix 5	AA5	A	186	190	Right-handed 310
Helix 6	AA6	A	198	206	Right-handed alpha
Helix 7	AA7	A	268	294	Right-handed alpha
Helix 8	AA8	A	315	331	Right-handed alpha
Helix 9	AA9	A	340	344	Right-handed 310
Helix 10	AB1	A	358	378	Right-handed alpha
Helix 11	AB2	A	385	399	Right-handed alpha
Helix 12	AB3	A	402	411	Right-handed alpha
Helix 13	AB4	B	51	65	Right-handed alpha
Helix 14	AB5	B	66	71	Right-handed 310
Helix 15	AB6	B	144	148	Right-handed 310
Helix 16	AB7	B	149	160	Right-handed alpha
Helix 17	AB8	B	186	189	Right-handed 310
Helix 18	AB9	B	198	206	Right-handed alpha
Helix 19	AC1	B	268	291	Right-handed alpha
Helix 20	AC2	B	316	331	Right-handed alpha
Helix 21	AC3	B	341	345	Right-handed 310
Helix 22	AC4	B	358	378	Right-handed alpha
Helix 23	AC5	B	385	399	Right-handed alpha
Helix 24	AC6	B	402	409	Right-handed alpha
Helix 25	AC7	C	44	65	Right-handed alpha
Helix 26	AC8	C	66	71	Right-handed 310
Helix 27	AC9	C	144	148	Right-handed 310
Helix 28	AD1	C	149	160	Right-handed alpha
Helix 29	AD2	C	186	190	Right-handed 310
Helix 30	AD3	C	198	206	Right-handed alpha
Helix 31	AD4	C	268	294	Right-handed alpha
Helix 32	AD5	C	315	331	Right-handed alpha
Helix 33	AD6	C	341	344	Right-handed 310
Helix 34	AD7	C	358	378	Right-handed alpha
Helix 35	AD8	C	385	399	Right-handed alpha
Helix 36	AD9	C	402	411	Right-handed alpha
Helix 37	AE1	D	44	65	Right-handed alpha
Helix 38	AE2	D	66	71	Right-handed 310
Helix 39	AE3	D	144	148	Right-handed 310
Helix 40	AE4	D	149	160	Right-handed alpha
Helix 41	AE5	D	186	189	Right-handed 310
Helix 42	AE6	D	198	206	Right-handed alpha
Helix 43	AE7	D	268	294	Right-handed alpha
Helix 44	AE8	D	318	331	Right-handed alpha
Helix 45	AE9	D	358	378	Right-handed alpha
Helix 46	AF1	D	385	399	Right-handed alpha
Helix 47	AF2	D	403	408	Right-handed alpha
Helix 48	AF3	E	55	65	Right-handed alpha
Helix 49	AF4	E	66	71	Right-handed 310
Helix 50	AF5	E	144	148	Right-handed 310
Helix 51	AF6	E	149	161	Right-handed alpha
Helix 52	AF7	E	186	190	Right-handed 310
Helix 53	AF8	E	198	206	Right-handed alpha
Helix 54	AF9	E	268	292	Right-handed alpha
Helix 55	AG1	E	316	330	Right-handed alpha
Helix 56	AG2	E	364	378	Right-handed alpha
Helix 57	AG3	E	385	399	Right-handed alpha
Helix 58	AG4	F	51	65	Right-handed alpha
Helix 59	AG5	F	66	71	Right-handed 310
Helix 60	AG6	F	144	148	Right-handed 310
Helix 61	AG7	F	149	160	Right-handed alpha
Helix 62	AG8	F	186	189	Right-handed 310
Helix 63	AG9	F	198	206	Right-handed alpha
Helix 64	AH1	F	268	292	Right-handed alpha
Helix 65	AH2	F	316	331	Right-handed alpha
Helix 66	AH3	F	341	344	Right-handed 310
Helix 67	AH4	F	358	378	Right-handed alpha
Helix 68	AH5	F	385	399	Right-handed alpha

There are 29 sheets in PDB entry 5H5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	260	266	anti-parallel
Strand 3	A	93	101	anti-parallel
Strand 4	A	225	229	anti-parallel
Strand 5	A	232	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	86	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	170	first strand
Strand 2	A	176	182	anti-parallel
Strand 3	A	107	110	anti-parallel
Strand 4	A	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	143	first strand
Strand 2	A	126	130	anti-parallel
Strand 3	A	193	196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	77	first strand
Strand 2	B	260	266	anti-parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	225	229	anti-parallel
Strand 5	B	232	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	86	first strand
Strand 2	B	248	252	anti-parallel
Strand 3	B	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	170	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	107	110	anti-parallel
Strand 4	B	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	126	132	anti-parallel
Strand 3	B	191	196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	348	first strand
Strand 2	B	355	356	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	77	first strand
Strand 2	C	260	266	anti-parallel
Strand 3	C	93	101	anti-parallel
Strand 4	C	225	229	anti-parallel
Strand 5	C	232	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	170	first strand
Strand 2	C	176	182	anti-parallel
Strand 3	C	107	110	anti-parallel
Strand 4	C	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	143	first strand
Strand 2	C	126	130	anti-parallel
Strand 3	C	193	196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	77	first strand
Strand 2	D	260	266	anti-parallel
Strand 3	D	93	101	anti-parallel
Strand 4	D	225	229	anti-parallel
Strand 5	D	232	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	86	first strand
Strand 2	D	248	252	anti-parallel
Strand 3	D	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	170	first strand
Strand 2	D	176	182	anti-parallel
Strand 3	D	107	110	anti-parallel
Strand 4	D	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	143	first strand
Strand 2	D	126	132	anti-parallel
Strand 3	D	191	196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	77	first strand
Strand 2	E	260	266	anti-parallel
Strand 3	E	93	101	anti-parallel
Strand 4	E	225	229	anti-parallel
Strand 5	E	232	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	86	first strand
Strand 2	E	248	252	anti-parallel
Strand 3	E	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	170	first strand
Strand 2	E	176	182	anti-parallel
Strand 3	E	107	110	anti-parallel
Strand 4	E	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	139	143	first strand
Strand 2	E	126	130	anti-parallel
Strand 3	E	193	196	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	77	first strand
Strand 2	F	260	266	anti-parallel
Strand 3	F	93	101	anti-parallel
Strand 4	F	225	229	anti-parallel
Strand 5	F	232	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	86	first strand
Strand 2	F	248	252	anti-parallel
Strand 3	F	240	241	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	170	first strand
Strand 2	F	176	182	anti-parallel
Strand 3	F	107	110	anti-parallel
Strand 4	F	216	220	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	139	143	first strand
Strand 2	F	126	132	anti-parallel
Strand 3	F	191	196	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	346	348	first strand
Strand 2	F	355	357	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H5V