Analysis of interatomic Contacts of Structural Units in PDB entry:
5H5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H5Y entry

There are 2 chains in PDB entry 5H5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21MET 316
B
 GLN 22MET 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5H5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 54Right-handed 310
Helix 2
AA2
A
68 80Right-handed alpha
Helix 3
AA3
A
94 108Right-handed alpha
Helix 4
AA4
A
117 119Right-handed 310
Helix 5
AA5
A
121 125Right-handed 310
Helix 6
AA6
A
127 141Right-handed alpha
Helix 7
AA7
A
148 161Right-handed alpha
Helix 8
AA8
A
168 176Right-handed alpha
Helix 9
AA9
A
178 193Right-handed alpha
Helix 10
AB1
A
194 198Right-handed 310
Helix 11
AB2
A
242 246Right-handed 310
Helix 12
AB3
A
261 273Right-handed alpha
Helix 13
AB4
A
282 292Right-handed alpha
Helix 14
AB5
A
299 307Right-handed alpha
Helix 15
AB6
B
50 54Right-handed 310
Helix 16
AB7
B
68 80Right-handed alpha
Helix 17
AB8
B
94 108Right-handed alpha
Helix 18
AB9
B
117 119Right-handed 310
Helix 19
AC1
B
121 125Right-handed 310
Helix 20
AC2
B
127 141Right-handed alpha
Helix 21
AC3
B
148 161Right-handed alpha
Helix 22
AC4
B
168 174Right-handed alpha
Helix 23
AC5
B
178 193Right-handed alpha
Helix 24
AC6
B
194 198Right-handed 310
Helix 25
AC7
B
261 273Right-handed alpha
Helix 26
AC8
B
282 292Right-handed alpha
Helix 27
AC9
B
299 308Right-handed alpha
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There are 6 sheets in PDB entry 5H5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
29 36anti-parallel
Strand 3
A
230 233anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 115first strand
Strand 2
A
85 90parallel
Strand 3
A
42 47parallel
Strand 4
A
214 216parallel
Strand 5
A
248 256anti-parallel
Strand 6
A
236 241anti-parallel
Strand 7
A
308 309parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
314 315anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 26first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
230 233anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
85 91parallel
Strand 3
B
42 48parallel
Strand 4
B
214 217parallel
Strand 5
B
248 256anti-parallel
Strand 6
B
236 241anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
314 315anti-parallel
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