Analysis of interatomic Contacts of Structural Units in PDB entry:
5H60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H60 entry

There is 1 chain in PDB entry 5H60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30ARG 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5H60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 59Right-handed 310
Helix 2
AA2
A
73 85Right-handed alpha
Helix 3
AA3
A
99 113Right-handed alpha
Helix 4
AA4
A
122 124Right-handed 310
Helix 5
AA5
A
126 130Right-handed 310
Helix 6
AA6
A
132 147Right-handed alpha
Helix 7
AA7
A
153 168Right-handed alpha
Helix 8
AA8
A
183 198Right-handed alpha
Helix 9
AA9
A
198 206Right-handed alpha
Helix 10
AB1
A
266 279Right-handed alpha
Helix 11
AB2
A
289 298Right-handed alpha
Helix 12
AB3
A
304 313Right-handed alpha
Helix 13
AB4
A
323 328Right-handed alpha
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There are 3 sheets in PDB entry 5H60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
236 237anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
90 95parallel
Strand 3
A
47 52parallel
Strand 4
A
219 222parallel
Strand 5
A
252 261anti-parallel
Strand 6
A
241 247anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
319 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il