Analysis of interatomic Contacts of Structural Units in PDB entry:
5H61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H61 entry

There are 2 chains in PDB entry 5H61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39SER 340
B
 SER 39SER 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5H61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 73Right-handed 310
Helix 2
AA2
A
87 99Right-handed alpha
Helix 3
AA3
A
113 127Right-handed alpha
Helix 4
AA4
A
136 138Right-handed 310
Helix 5
AA5
A
140 144Right-handed 310
Helix 6
AA6
A
146 159Right-handed alpha
Helix 7
AA7
A
167 183Right-handed alpha
Helix 8
AA8
A
189 197Right-handed alpha
Helix 9
AA9
A
199 214Right-handed alpha
Helix 10
AB1
A
215 221Right-handed alpha
Helix 11
AB2
A
282 295Right-handed alpha
Helix 12
AB3
A
303 315Right-handed alpha
Helix 13
AB4
A
320 329Right-handed alpha
Helix 14
AB5
B
69 73Right-handed 310
Helix 15
AB6
B
87 99Right-handed alpha
Helix 16
AB7
B
113 127Right-handed alpha
Helix 17
AB8
B
136 138Right-handed 310
Helix 18
AB9
B
140 144Right-handed 310
Helix 19
AC1
B
146 159Right-handed alpha
Helix 20
AC2
B
167 183Right-handed alpha
Helix 21
AC3
B
189 196Right-handed alpha
Helix 22
AC4
B
199 214Right-handed alpha
Helix 23
AC5
B
215 221Right-handed alpha
Helix 24
AC6
B
282 295Right-handed alpha
Helix 25
AC7
B
303 314Right-handed alpha
Helix 26
AC8
B
320 329Right-handed alpha
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There are 6 sheets in PDB entry 5H61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
251 254anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
104 109parallel
Strand 3
A
61 66parallel
Strand 4
A
233 238parallel
Strand 5
A
269 279anti-parallel
Strand 6
A
257 262anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
335 337anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
48 55anti-parallel
Strand 3
B
251 254anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
104 109parallel
Strand 3
B
61 66parallel
Strand 4
B
233 238parallel
Strand 5
B
267 279anti-parallel
Strand 6
B
257 264anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 244first strand
Strand 2
B
335 337anti-parallel
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