Analysis of interatomic Contacts of Structural Units in PDB entry:
5H62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H62 entry

There are 2 chains in PDB entry 5H62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40ARG 348
B
 GLY 41SER 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5H62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 73Right-handed 310
Helix 2
AA2
A
87 99Right-handed alpha
Helix 3
AA3
A
113 127Right-handed alpha
Helix 4
AA4
A
136 138Right-handed 310
Helix 5
AA5
A
140 144Right-handed 310
Helix 6
AA6
A
146 161Right-handed alpha
Helix 7
AA7
A
167 185Right-handed alpha
Helix 8
AA8
A
189 194Right-handed alpha
Helix 9
AA9
A
195 198Right-handed 310
Helix 10
AB1
A
199 214Right-handed alpha
Helix 11
AB2
A
215 221Right-handed alpha
Helix 12
AB3
A
282 295Right-handed alpha
Helix 13
AB4
A
305 314Right-handed alpha
Helix 14
AB5
A
320 329Right-handed alpha
Helix 15
AB6
A
338 343Right-handed 310
Helix 16
AB7
B
69 73Right-handed 310
Helix 17
AB8
B
87 99Right-handed alpha
Helix 18
AB9
B
113 127Right-handed alpha
Helix 19
AC1
B
136 138Right-handed 310
Helix 20
AC2
B
140 144Right-handed 310
Helix 21
AC3
B
146 161Right-handed alpha
Helix 22
AC4
B
167 185Right-handed alpha
Helix 23
AC5
B
191 195Right-handed 310
Helix 24
AC6
B
199 214Right-handed alpha
Helix 25
AC7
B
215 221Right-handed alpha
Helix 26
AC8
B
282 295Right-handed alpha
Helix 27
AC9
B
304 314Right-handed alpha
Helix 28
AD1
B
320 329Right-handed alpha
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There are 6 sheets in PDB entry 5H62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 55anti-parallel
Strand 3
A
251 254anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
104 109parallel
Strand 3
A
61 66parallel
Strand 4
A
233 238parallel
Strand 5
A
269 279anti-parallel
Strand 6
A
257 262anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
335 336anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
48 55anti-parallel
Strand 3
B
251 254anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
104 109parallel
Strand 3
B
61 66parallel
Strand 4
B
233 238parallel
Strand 5
B
268 279anti-parallel
Strand 6
B
257 263anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 244first strand
Strand 2
B
335 336anti-parallel
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