Analysis of interatomic Contacts of Structural Units in PDB entry:
5H63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H63 entry

There are 4 chains in PDB entry 5H63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 40	ARG 348
B	SER 40	ARG 348
C	GLY 41	LEU 342
D	GLY 41	LEU 342

There are 59 helices in PDB entry 5H63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	87	99	Right-handed alpha
Helix 3	AA3	A	113	127	Right-handed alpha
Helix 4	AA4	A	136	138	Right-handed 310
Helix 5	AA5	A	140	144	Right-handed 310
Helix 6	AA6	A	146	161	Right-handed alpha
Helix 7	AA7	A	167	185	Right-handed alpha
Helix 8	AA8	A	189	194	Right-handed alpha
Helix 9	AA9	A	195	198	Right-handed 310
Helix 10	AB1	A	199	214	Right-handed alpha
Helix 11	AB2	A	215	221	Right-handed alpha
Helix 12	AB3	A	282	295	Right-handed alpha
Helix 13	AB4	A	305	314	Right-handed alpha
Helix 14	AB5	A	320	329	Right-handed alpha
Helix 15	AB6	A	338	343	Right-handed 310
Helix 16	AB7	B	69	73	Right-handed 310
Helix 17	AB8	B	87	99	Right-handed alpha
Helix 18	AB9	B	113	127	Right-handed alpha
Helix 19	AC1	B	136	138	Right-handed 310
Helix 20	AC2	B	140	144	Right-handed 310
Helix 21	AC3	B	146	161	Right-handed alpha
Helix 22	AC4	B	167	185	Right-handed alpha
Helix 23	AC5	B	189	194	Right-handed alpha
Helix 24	AC6	B	195	198	Right-handed 310
Helix 25	AC7	B	199	214	Right-handed alpha
Helix 26	AC8	B	215	221	Right-handed alpha
Helix 27	AC9	B	282	295	Right-handed alpha
Helix 28	AD1	B	305	314	Right-handed alpha
Helix 29	AD2	B	320	329	Right-handed alpha
Helix 30	AD3	B	338	343	Right-handed 310
Helix 31	AD4	C	69	73	Right-handed 310
Helix 32	AD5	C	87	99	Right-handed alpha
Helix 33	AD6	C	113	127	Right-handed alpha
Helix 34	AD7	C	136	138	Right-handed 310
Helix 35	AD8	C	140	144	Right-handed 310
Helix 36	AD9	C	146	161	Right-handed alpha
Helix 37	AE1	C	167	185	Right-handed alpha
Helix 38	AE2	C	195	198	Right-handed 310
Helix 39	AE3	C	199	214	Right-handed alpha
Helix 40	AE4	C	215	221	Right-handed alpha
Helix 41	AE5	C	282	293	Right-handed alpha
Helix 42	AE6	C	304	314	Right-handed alpha
Helix 43	AE7	C	320	329	Right-handed alpha
Helix 44	AE8	C	338	342	Right-handed 310
Helix 45	AE9	D	69	73	Right-handed 310
Helix 46	AF1	D	87	99	Right-handed alpha
Helix 47	AF2	D	113	127	Right-handed alpha
Helix 48	AF3	D	136	138	Right-handed 310
Helix 49	AF4	D	140	144	Right-handed 310
Helix 50	AF5	D	146	161	Right-handed alpha
Helix 51	AF6	D	167	185	Right-handed alpha
Helix 52	AF7	D	189	194	Right-handed alpha
Helix 53	AF8	D	195	198	Right-handed 310
Helix 54	AF9	D	199	214	Right-handed alpha
Helix 55	AG1	D	215	221	Right-handed alpha
Helix 56	AG2	D	282	293	Right-handed alpha
Helix 57	AG3	D	304	314	Right-handed alpha
Helix 58	AG4	D	320	329	Right-handed alpha
Helix 59	AG5	D	338	342	Right-handed 310

There are 12 sheets in PDB entry 5H63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	48	55	anti-parallel
Strand 3	A	251	254	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	134	first strand
Strand 2	A	104	109	parallel
Strand 3	A	61	66	parallel
Strand 4	A	233	238	parallel
Strand 5	A	269	279	anti-parallel
Strand 6	A	257	262	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	335	336	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	48	55	anti-parallel
Strand 3	B	251	254	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	104	109	parallel
Strand 3	B	61	66	parallel
Strand 4	B	233	238	parallel
Strand 5	B	267	279	anti-parallel
Strand 6	B	257	264	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	335	336	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	48	55	anti-parallel
Strand 3	C	251	254	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	134	first strand
Strand 2	C	104	109	parallel
Strand 3	C	61	66	parallel
Strand 4	C	233	238	parallel
Strand 5	C	267	279	anti-parallel
Strand 6	C	257	264	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	335	336	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	48	55	anti-parallel
Strand 3	D	251	254	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	104	109	parallel
Strand 3	D	61	66	parallel
Strand 4	D	233	238	parallel
Strand 5	D	267	279	anti-parallel
Strand 6	D	257	264	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	244	first strand
Strand 2	D	335	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H63

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H63