Analysis of interatomic Contacts of Structural Units in PDB entry:
5H65


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H65 entry

There are 2 chains in PDB entry 5H65 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 341ILE 634
B
 GLY 264SER 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5H65. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
347 353Right-handed alpha
Helix 2
AA2
A
373 376Right-handed 310
Helix 3
AA3
A
393 405Right-handed alpha
Helix 4
AA4
A
410 414Right-handed 310
Helix 5
AA5
A
447 450Right-handed 310
Helix 6
AA6
A
459 470Right-handed alpha
Helix 7
AA7
A
511 518Right-handed 310
Helix 8
AA8
A
525 533Right-handed alpha
Helix 9
AA9
A
569 574Right-handed alpha
Helix 10
AB1
A
576 591Right-handed alpha
Helix 11
AB2
A
596 600Right-handed 310
Helix 12
AB3
B
265 279Right-handed alpha
Helix 13
AB4
B
291 300Right-handed alpha
Helix 14
AB5
B
309 313Right-handed 310
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There are 3 sheets in PDB entry 5H65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
378 381anti-parallel
Strand 3
A
539 549anti-parallel
Strand 4
A
554 561anti-parallel
Strand 5
A
620 625parallel
Strand 6
A
603 611anti-parallel
Strand 7
A
359 370anti-parallel
Strand 8
A
539 549anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 425first strand
Strand 2
A
433 439anti-parallel
Strand 3
A
452 456anti-parallel
Strand 4
A
472 478parallel
Strand 5
A
483 485anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
498 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il