Analysis of interatomic Contacts of Structural Units in PDB entry:
5H6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H6O entry

There is 1 chain in PDB entry 5H6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5H6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 37Right-handed alpha
Helix 2
AA2
A
69 78Right-handed alpha
Helix 3
AA3
A
121 125Right-handed 310
Helix 4
AA4
A
135 146Right-handed alpha
Helix 5
AA5
A
157 167Right-handed alpha
Helix 6
AA6
A
177 183Right-handed alpha
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
215 222Right-handed alpha
Helix 9
AA9
A
227 245Right-handed alpha
Helix 10
AB1
A
285 287Right-handed 310
Helix 11
AB2
A
288 302Right-handed alpha
Helix 12
AB3
A
303 304Right-handed 310
Helix 13
AB4
A
305 309Right-handed 310
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There are 3 sheets in PDB entry 5H6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
12 16parallel
Strand 3
A
83 87parallel
Strand 4
A
207 212anti-parallel
Strand 5
A
99 104anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
130 132parallel
Strand 3
A
172 176parallel
Strand 4
A
112 115anti-parallel
Strand 5
A
191 193anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 259first strand
Strand 2
A
262 270anti-parallel
Strand 3
A
277 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il