Analysis of interatomic Contacts of Structural Units in PDB entry:
5H6S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H6S entry

There are 4 chains in PDB entry 5H6S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 4	ALA 459
B	GLU 4	ALA 459
C	GLU 4	ILE 460
D	GLU 4	ALA 459

There are 82 helices in PDB entry 5H6S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	9	19	Right-handed alpha
Helix 3	AA3	A	23	43	Right-handed alpha
Helix 4	AA4	A	49	65	Right-handed alpha
Helix 5	AA5	A	94	98	Right-handed 310
Helix 6	AA6	A	106	115	Right-handed alpha
Helix 7	AA7	A	126	130	Right-handed 310
Helix 8	AA8	A	156	165	Right-handed alpha
Helix 9	AA9	A	180	187	Right-handed alpha
Helix 10	AB1	A	211	216	Right-handed alpha
Helix 11	AB2	A	226	238	Right-handed alpha
Helix 12	AB3	A	273	290	Right-handed alpha
Helix 13	AB4	A	303	320	Right-handed alpha
Helix 14	AB5	A	320	326	Right-handed alpha
Helix 15	AB6	A	327	329	Right-handed 310
Helix 16	AB7	A	330	342	Right-handed alpha
Helix 17	AB8	A	349	371	Right-handed alpha
Helix 18	AB9	A	396	407	Right-handed alpha
Helix 19	AC1	A	411	417	Right-handed alpha
Helix 20	AC2	A	435	450	Right-handed alpha
Helix 21	AC3	B	4	8	Right-handed 310
Helix 22	AC4	B	9	19	Right-handed alpha
Helix 23	AC5	B	23	43	Right-handed alpha
Helix 24	AC6	B	49	65	Right-handed alpha
Helix 25	AC7	B	94	98	Right-handed 310
Helix 26	AC8	B	106	115	Right-handed alpha
Helix 27	AC9	B	126	130	Right-handed 310
Helix 28	AD1	B	156	165	Right-handed alpha
Helix 29	AD2	B	180	187	Right-handed alpha
Helix 30	AD3	B	211	216	Right-handed alpha
Helix 31	AD4	B	226	238	Right-handed alpha
Helix 32	AD5	B	273	290	Right-handed alpha
Helix 33	AD6	B	303	320	Right-handed alpha
Helix 34	AD7	B	320	326	Right-handed alpha
Helix 35	AD8	B	327	329	Right-handed 310
Helix 36	AD9	B	330	341	Right-handed alpha
Helix 37	AE1	B	342	344	Right-handed 310
Helix 38	AE2	B	349	372	Right-handed alpha
Helix 39	AE3	B	395	407	Right-handed alpha
Helix 40	AE4	B	411	417	Right-handed alpha
Helix 41	AE5	B	435	450	Right-handed alpha
Helix 42	AE6	C	4	8	Right-handed 310
Helix 43	AE7	C	9	19	Right-handed alpha
Helix 44	AE8	C	23	43	Right-handed alpha
Helix 45	AE9	C	49	65	Right-handed alpha
Helix 46	AF1	C	94	98	Right-handed 310
Helix 47	AF2	C	106	115	Right-handed alpha
Helix 48	AF3	C	126	130	Right-handed 310
Helix 49	AF4	C	156	165	Right-handed alpha
Helix 50	AF5	C	180	187	Right-handed alpha
Helix 51	AF6	C	211	216	Right-handed alpha
Helix 52	AF7	C	226	238	Right-handed alpha
Helix 53	AF8	C	273	291	Right-handed alpha
Helix 54	AF9	C	303	320	Right-handed alpha
Helix 55	AG1	C	320	326	Right-handed alpha
Helix 56	AG2	C	327	329	Right-handed 310
Helix 57	AG3	C	330	341	Right-handed alpha
Helix 58	AG4	C	342	344	Right-handed 310
Helix 59	AG5	C	349	374	Right-handed alpha
Helix 60	AG6	C	396	407	Right-handed alpha
Helix 61	AG7	C	411	416	Right-handed alpha
Helix 62	AG8	C	435	448	Right-handed alpha
Helix 63	AG9	D	4	8	Right-handed 310
Helix 64	AH1	D	9	19	Right-handed alpha
Helix 65	AH2	D	23	43	Right-handed alpha
Helix 66	AH3	D	49	65	Right-handed alpha
Helix 67	AH4	D	94	98	Right-handed 310
Helix 68	AH5	D	106	115	Right-handed alpha
Helix 69	AH6	D	126	130	Right-handed 310
Helix 70	AH7	D	156	165	Right-handed alpha
Helix 71	AH8	D	180	187	Right-handed alpha
Helix 72	AH9	D	211	216	Right-handed alpha
Helix 73	AI1	D	226	238	Right-handed alpha
Helix 74	AI2	D	273	291	Right-handed alpha
Helix 75	AI3	D	303	320	Right-handed alpha
Helix 76	AI4	D	320	326	Right-handed alpha
Helix 77	AI5	D	330	341	Right-handed alpha
Helix 78	AI6	D	342	344	Right-handed 310
Helix 79	AI7	D	349	372	Right-handed alpha
Helix 80	AI8	D	396	407	Right-handed alpha
Helix 81	AI9	D	411	416	Right-handed alpha
Helix 82	AJ1	D	435	448	Right-handed alpha

There are 8 sheets in PDB entry 5H6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	76	80	parallel
Strand 4	A	170	175	parallel
Strand 5	A	219	224	anti-parallel
Strand 6	A	190	193	anti-parallel
Strand 7	A	420	422	anti-parallel
Strand 8	A	427	431	anti-parallel
Strand 9	A	376	380	anti-parallel
Strand 10	A	261	263	parallel
Strand 11	A	294	296	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	140	141	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	118	123	anti-parallel
Strand 3	B	76	80	parallel
Strand 4	B	170	175	parallel
Strand 5	B	219	224	anti-parallel
Strand 6	B	190	193	anti-parallel
Strand 7	B	420	422	anti-parallel
Strand 8	B	427	431	anti-parallel
Strand 9	B	376	380	anti-parallel
Strand 10	B	260	263	parallel
Strand 11	B	293	295	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	136	first strand
Strand 2	B	140	141	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	76	80	parallel
Strand 4	C	170	175	parallel
Strand 5	C	219	224	anti-parallel
Strand 6	C	190	193	anti-parallel
Strand 7	C	420	422	anti-parallel
Strand 8	C	427	431	anti-parallel
Strand 9	C	376	380	anti-parallel
Strand 10	C	261	263	parallel
Strand 11	C	294	295	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	140	141	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	118	123	anti-parallel
Strand 3	D	76	80	parallel
Strand 4	D	170	175	parallel
Strand 5	D	219	224	anti-parallel
Strand 6	D	190	193	anti-parallel
Strand 7	D	420	422	anti-parallel
Strand 8	D	427	431	anti-parallel
Strand 9	D	376	380	anti-parallel
Strand 10	D	261	263	parallel
Strand 11	D	294	295	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	140	141	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H6S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H6S