Analysis of interatomic Contacts of Structural Units in PDB entry:
5H6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H6T entry

There are 2 chains in PDB entry 5H6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ALA 459
B
 SER -19ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5H6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
9 19Right-handed alpha
Helix 3
AA3
A
23 43Right-handed alpha
Helix 4
AA4
A
49 65Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
106 115Right-handed alpha
Helix 7
AA7
A
126 130Right-handed 310
Helix 8
AA8
A
156 165Right-handed alpha
Helix 9
AA9
A
180 187Right-handed alpha
Helix 10
AB1
A
211 216Right-handed alpha
Helix 11
AB2
A
226 238Right-handed alpha
Helix 12
AB3
A
273 290Right-handed alpha
Helix 13
AB4
A
303 320Right-handed alpha
Helix 14
AB5
A
320 326Right-handed alpha
Helix 15
AB6
A
330 341Right-handed alpha
Helix 16
AB7
A
342 344Right-handed 310
Helix 17
AB8
A
349 371Right-handed alpha
Helix 18
AB9
A
395 407Right-handed alpha
Helix 19
AC1
A
411 417Right-handed alpha
Helix 20
AC2
A
435 448Right-handed alpha
Helix 21
AC3
B
-6 0Right-handed alpha
Helix 22
AC4
B
4 8Right-handed 310
Helix 23
AC5
B
9 19Right-handed alpha
Helix 24
AC6
B
23 43Right-handed alpha
Helix 25
AC7
B
49 65Right-handed alpha
Helix 26
AC8
B
94 98Right-handed 310
Helix 27
AC9
B
106 115Right-handed alpha
Helix 28
AD1
B
126 130Right-handed 310
Helix 29
AD2
B
156 165Right-handed alpha
Helix 30
AD3
B
180 187Right-handed alpha
Helix 31
AD4
B
211 216Right-handed alpha
Helix 32
AD5
B
226 238Right-handed alpha
Helix 33
AD6
B
273 291Right-handed alpha
Helix 34
AD7
B
303 320Right-handed alpha
Helix 35
AD8
B
320 326Right-handed alpha
Helix 36
AD9
B
327 329Right-handed 310
Helix 37
AE1
B
330 341Right-handed alpha
Helix 38
AE2
B
342 344Right-handed 310
Helix 39
AE3
B
349 374Right-handed alpha
Helix 40
AE4
B
396 407Right-handed alpha
Helix 41
AE5
B
411 417Right-handed alpha
Helix 42
AE6
B
435 448Right-handed alpha
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There are 4 sheets in PDB entry 5H6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
76 80parallel
Strand 4
A
170 175parallel
Strand 5
A
219 224anti-parallel
Strand 6
A
190 193anti-parallel
Strand 7
A
420 422anti-parallel
Strand 8
A
427 431anti-parallel
Strand 9
A
376 380anti-parallel
Strand 10
A
260 263parallel
Strand 11
A
293 295parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
140 141anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
76 80parallel
Strand 4
B
170 175parallel
Strand 5
B
219 224anti-parallel
Strand 6
B
190 193anti-parallel
Strand 7
B
420 422anti-parallel
Strand 8
B
427 431anti-parallel
Strand 9
B
376 380anti-parallel
Strand 10
B
261 263parallel
Strand 11
B
294 295parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
140 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il