Analysis of interatomic Contacts of Structural Units in PDB entry:
5H7D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H7D entry

There are 5 chains in PDB entry 5H7D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	ALA 501
B	SER 7	ALA 501
E	LYS 107	ARG 219
F	LYS 107	ALA 218
C	SER 7	ARG 99

There are240 helices in PDB entry 5H7D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	27	46	Right-handed alpha
Helix 3	AA3	A	47	57	Right-handed alpha
Helix 4	AA4	A	58	65	Right-handed 310
Helix 5	AA5	A	88	93	Right-handed alpha
Helix 6	AA6	A	100	114	Right-handed alpha
Helix 7	AA7	A	123	137	Right-handed alpha
Helix 8	AA8	A	149	166	Right-handed alpha
Helix 9	AA9	A	167	169	Right-handed 310
Helix 10	AB1	A	184	191	Right-handed alpha
Helix 11	AB2	A	193	198	Right-handed alpha
Helix 12	AB3	A	199	201	Right-handed 310
Helix 13	AB4	A	214	228	Right-handed alpha
Helix 14	AB5	A	252	265	Right-handed alpha
Helix 15	AB6	A	284	289	Right-handed 310
Helix 16	AB7	A	299	304	Right-handed 310
Helix 17	AB8	A	316	320	Right-handed alpha
Helix 18	AB9	A	321	323	Right-handed 310
Helix 19	AC1	A	336	353	Right-handed alpha
Helix 20	AC2	A	354	377	Right-handed alpha
Helix 21	AC3	A	397	411	Right-handed alpha
Helix 22	AC4	A	434	464	Right-handed alpha
Helix 23	AC5	A	468	482	Right-handed alpha
Helix 24	AC6	A	485	499	Right-handed alpha
Helix 25	AC7	B	9	23	Right-handed alpha
Helix 26	AC8	B	27	46	Right-handed alpha
Helix 27	AC9	B	47	57	Right-handed alpha
Helix 28	AD1	B	58	65	Right-handed 310
Helix 29	AD2	B	88	93	Right-handed alpha
Helix 30	AD3	B	100	114	Right-handed alpha
Helix 31	AD4	B	123	137	Right-handed alpha
Helix 32	AD5	B	149	166	Right-handed alpha
Helix 33	AD6	B	167	169	Right-handed 310
Helix 34	AD7	B	184	191	Right-handed alpha
Helix 35	AD8	B	193	198	Right-handed alpha
Helix 36	AD9	B	199	201	Right-handed 310
Helix 37	AE1	B	214	228	Right-handed alpha
Helix 38	AE2	B	252	265	Right-handed alpha
Helix 39	AE3	B	284	289	Right-handed 310
Helix 40	AE4	B	299	304	Right-handed 310
Helix 41	AE5	B	316	320	Right-handed alpha
Helix 42	AE6	B	321	323	Right-handed 310
Helix 43	AE7	B	336	353	Right-handed alpha
Helix 44	AE8	B	354	377	Right-handed alpha
Helix 45	AE9	B	397	411	Right-handed alpha
Helix 46	AF1	B	434	464	Right-handed alpha
Helix 47	AF2	B	470	482	Right-handed alpha
Helix 48	AF3	B	486	498	Right-handed alpha
Helix 49	AF4	E	108	118	Right-handed alpha
Helix 50	AF5	E	123	137	Right-handed alpha
Helix 51	AF6	E	140	165	Right-handed alpha
Helix 52	AF7	E	173	184	Right-handed alpha
Helix 53	AF8	E	189	201	Right-handed alpha
Helix 54	AF9	E	209	219	Right-handed alpha
Helix 55	AG1	F	108	118	Right-handed alpha
Helix 56	AG2	F	123	137	Right-handed alpha
Helix 57	AG3	F	141	163	Right-handed alpha
Helix 58	AG4	F	173	184	Right-handed alpha
Helix 59	AG5	F	189	201	Right-handed alpha
Helix 60	AG6	F	209	218	Right-handed alpha
Helix 61	AG7	C	9	23	Right-handed alpha
Helix 62	AG8	C	27	46	Right-handed alpha
Helix 63	AG9	C	47	57	Right-handed alpha
Helix 64	AH1	C	58	65	Right-handed 310
Helix 65	AH2	C	88	93	Right-handed alpha
Helix 66	AH3	C	100	114	Right-handed alpha
Helix 67	AH4	C	123	137	Right-handed alpha
Helix 68	AH5	C	149	166	Right-handed alpha
Helix 69	AH6	C	167	169	Right-handed 310
Helix 70	AH7	C	184	191	Right-handed alpha
Helix 71	AH8	C	193	198	Right-handed alpha
Helix 72	AH9	C	199	201	Right-handed 310
Helix 73	AI1	C	214	228	Right-handed alpha
Helix 74	AI2	C	252	265	Right-handed alpha
Helix 75	AI3	C	284	289	Right-handed 310
Helix 76	AI4	C	299	304	Right-handed 310
Helix 77	AI5	C	316	320	Right-handed alpha
Helix 78	AI6	C	321	323	Right-handed 310
Helix 79	AI7	C	336	353	Right-handed alpha
Helix 80	AI8	C	354	377	Right-handed alpha
Helix 81	AI9	C	397	411	Right-handed alpha
Helix 82	AJ1	C	434	464	Right-handed alpha
Helix 83	AJ2	C	468	482	Right-handed alpha
Helix 84	AJ3	C	485	499	Right-handed alpha
Helix 85	AJ4	D	9	23	Right-handed alpha
Helix 86	AJ5	D	27	46	Right-handed alpha
Helix 87	AJ6	D	47	57	Right-handed alpha
Helix 88	AJ7	D	58	65	Right-handed 310
Helix 89	AJ8	D	88	93	Right-handed alpha
Helix 90	AJ9	D	100	114	Right-handed alpha
Helix 91	AK1	D	123	137	Right-handed alpha
Helix 92	AK2	D	149	166	Right-handed alpha
Helix 93	AK3	D	167	169	Right-handed 310
Helix 94	AK4	D	184	191	Right-handed alpha
Helix 95	AK5	D	193	198	Right-handed alpha
Helix 96	AK6	D	199	201	Right-handed 310
Helix 97	AK7	D	214	228	Right-handed alpha
Helix 98	AK8	D	252	265	Right-handed alpha
Helix 99	AK9	D	284	289	Right-handed 310
Helix 100	AL1	D	299	304	Right-handed 310
Helix 101	AL2	D	316	320	Right-handed alpha
Helix 102	AL3	D	321	323	Right-handed 310
Helix 103	AL4	D	336	353	Right-handed alpha
Helix 104	AL5	D	354	377	Right-handed alpha
Helix 105	AL6	D	397	411	Right-handed alpha
Helix 106	AL7	D	434	464	Right-handed alpha
Helix 107	AL8	D	468	482	Right-handed alpha
Helix 108	AL9	D	486	498	Right-handed alpha
Helix 109	AM1	G	108	118	Right-handed alpha
Helix 110	AM2	G	123	137	Right-handed alpha
Helix 111	AM3	G	140	165	Right-handed alpha
Helix 112	AM4	G	173	184	Right-handed alpha
Helix 113	AM5	G	189	201	Right-handed alpha
Helix 114	AM6	G	209	219	Right-handed alpha
Helix 115	AM7	H	108	118	Right-handed alpha
Helix 116	AM8	H	123	137	Right-handed alpha
Helix 117	AM9	H	141	165	Right-handed alpha
Helix 118	AN1	H	173	184	Right-handed alpha
Helix 119	AN2	H	189	201	Right-handed alpha
Helix 120	AN3	H	209	218	Right-handed alpha
Helix 121	AN4	I	9	23	Right-handed alpha
Helix 122	AN5	I	27	46	Right-handed alpha
Helix 123	AN6	I	47	57	Right-handed alpha
Helix 124	AN7	I	58	65	Right-handed 310
Helix 125	AN8	I	88	93	Right-handed alpha
Helix 126	AN9	I	100	114	Right-handed alpha
Helix 127	AO1	I	123	137	Right-handed alpha
Helix 128	AO2	I	149	166	Right-handed alpha
Helix 129	AO3	I	167	169	Right-handed 310
Helix 130	AO4	I	184	191	Right-handed alpha
Helix 131	AO5	I	193	198	Right-handed alpha
Helix 132	AO6	I	199	201	Right-handed 310
Helix 133	AO7	I	214	228	Right-handed alpha
Helix 134	AO8	I	252	265	Right-handed alpha
Helix 135	AO9	I	284	289	Right-handed 310
Helix 136	AP1	I	299	304	Right-handed 310
Helix 137	AP2	I	316	320	Right-handed alpha
Helix 138	AP3	I	321	323	Right-handed 310
Helix 139	AP4	I	336	353	Right-handed alpha
Helix 140	AP5	I	354	377	Right-handed alpha
Helix 141	AP6	I	397	411	Right-handed alpha
Helix 142	AP7	I	434	464	Right-handed alpha
Helix 143	AP8	I	468	482	Right-handed alpha
Helix 144	AP9	I	485	499	Right-handed alpha
Helix 145	AQ1	J	9	23	Right-handed alpha
Helix 146	AQ2	J	27	46	Right-handed alpha
Helix 147	AQ3	J	47	57	Right-handed alpha
Helix 148	AQ4	J	58	65	Right-handed 310
Helix 149	AQ5	J	88	93	Right-handed alpha
Helix 150	AQ6	J	100	114	Right-handed alpha
Helix 151	AQ7	J	123	137	Right-handed alpha
Helix 152	AQ8	J	149	166	Right-handed alpha
Helix 153	AQ9	J	167	169	Right-handed 310
Helix 154	AR1	J	184	191	Right-handed alpha
Helix 155	AR2	J	193	198	Right-handed alpha
Helix 156	AR3	J	199	201	Right-handed 310
Helix 157	AR4	J	214	228	Right-handed alpha
Helix 158	AR5	J	252	265	Right-handed alpha
Helix 159	AR6	J	284	289	Right-handed 310
Helix 160	AR7	J	299	304	Right-handed 310
Helix 161	AR8	J	316	320	Right-handed alpha
Helix 162	AR9	J	321	323	Right-handed 310
Helix 163	AS1	J	336	353	Right-handed alpha
Helix 164	AS2	J	354	377	Right-handed alpha
Helix 165	AS3	J	397	411	Right-handed alpha
Helix 166	AS4	J	434	464	Right-handed alpha
Helix 167	AS5	J	470	482	Right-handed alpha
Helix 168	AS6	J	486	498	Right-handed alpha
Helix 169	AS7	K	108	118	Right-handed alpha
Helix 170	AS8	K	123	137	Right-handed alpha
Helix 171	AS9	K	140	165	Right-handed alpha
Helix 172	AT1	K	173	184	Right-handed alpha
Helix 173	AT2	K	189	201	Right-handed alpha
Helix 174	AT3	K	209	219	Right-handed alpha
Helix 175	AT4	L	108	118	Right-handed alpha
Helix 176	AT5	L	123	137	Right-handed alpha
Helix 177	AT6	L	141	165	Right-handed alpha
Helix 178	AT7	L	173	184	Right-handed alpha
Helix 179	AT8	L	189	201	Right-handed alpha
Helix 180	AT9	L	209	218	Right-handed alpha
Helix 181	AU1	M	9	23	Right-handed alpha
Helix 182	AU2	M	27	46	Right-handed alpha
Helix 183	AU3	M	47	57	Right-handed alpha
Helix 184	AU4	M	58	65	Right-handed 310
Helix 185	AU5	M	88	93	Right-handed alpha
Helix 186	AU6	M	100	114	Right-handed alpha
Helix 187	AU7	M	123	137	Right-handed alpha
Helix 188	AU8	M	149	166	Right-handed alpha
Helix 189	AU9	M	167	169	Right-handed 310
Helix 190	AV1	M	184	191	Right-handed alpha
Helix 191	AV2	M	193	198	Right-handed alpha
Helix 192	AV3	M	199	201	Right-handed 310
Helix 193	AV4	M	214	228	Right-handed alpha
Helix 194	AV5	M	252	265	Right-handed alpha
Helix 195	AV6	M	284	289	Right-handed 310
Helix 196	AV7	M	299	304	Right-handed 310
Helix 197	AV8	M	316	320	Right-handed alpha
Helix 198	AV9	M	321	323	Right-handed 310
Helix 199	AW1	M	336	353	Right-handed alpha
Helix 200	AW2	M	354	377	Right-handed alpha
Helix 201	AW3	M	397	411	Right-handed alpha
Helix 202	AW4	M	434	464	Right-handed alpha
Helix 203	AW5	M	468	482	Right-handed alpha
Helix 204	AW6	M	485	499	Right-handed alpha
Helix 205	AW7	N	9	23	Right-handed alpha
Helix 206	AW8	N	27	46	Right-handed alpha
Helix 207	AW9	N	47	57	Right-handed alpha
Helix 208	AX1	N	58	65	Right-handed 310
Helix 209	AX2	N	88	93	Right-handed alpha
Helix 210	AX3	N	100	114	Right-handed alpha
Helix 211	AX4	N	123	137	Right-handed alpha
Helix 212	AX5	N	149	166	Right-handed alpha
Helix 213	AX6	N	167	169	Right-handed 310
Helix 214	AX7	N	184	191	Right-handed alpha
Helix 215	AX8	N	193	198	Right-handed alpha
Helix 216	AX9	N	199	201	Right-handed 310
Helix 217	AY1	N	214	228	Right-handed alpha
Helix 218	AY2	N	252	265	Right-handed alpha
Helix 219	AY3	N	284	289	Right-handed 310
Helix 220	AY4	N	299	304	Right-handed 310
Helix 221	AY5	N	316	320	Right-handed alpha
Helix 222	AY6	N	321	323	Right-handed 310
Helix 223	AY7	N	336	353	Right-handed alpha
Helix 224	AY8	N	354	377	Right-handed alpha
Helix 225	AY9	N	397	411	Right-handed alpha
Helix 226	AZ1	N	434	463	Right-handed alpha
Helix 227	AZ2	N	468	482	Right-handed alpha
Helix 228	AZ3	N	486	500	Right-handed alpha
Helix 229	AZ4	O	108	118	Right-handed alpha
Helix 230	AZ5	O	123	137	Right-handed alpha
Helix 231	AZ6	O	140	165	Right-handed alpha
Helix 232	AZ7	O	173	184	Right-handed alpha
Helix 233	AZ8	O	189	201	Right-handed alpha
Helix 234	AZ9	O	209	219	Right-handed alpha
Helix 235	BA1	P	108	118	Right-handed alpha
Helix 236	BA2	P	123	137	Right-handed alpha
Helix 237	BA3	P	141	165	Right-handed alpha
Helix 238	BA4	P	173	184	Right-handed alpha
Helix 239	BA5	P	189	201	Right-handed alpha
Helix 240	BA6	P	209	218	Right-handed alpha

There are 24 sheets in PDB entry 5H7D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	75	78	anti-parallel
Strand 3	A	83	86	anti-parallel
Strand 4	A	413	414	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	147	first strand
Strand 2	A	310	315	anti-parallel
Strand 3	A	295	298	anti-parallel
Strand 4	A	267	271	parallel
Strand 5	A	232	237	parallel
Strand 6	A	172	176	parallel
Strand 7	A	207	210	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	387	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	421	427	anti-parallel
Strand 4	A	416	418	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	75	78	anti-parallel
Strand 3	B	83	86	anti-parallel
Strand 4	B	413	414	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	147	first strand
Strand 2	B	310	315	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	267	271	parallel
Strand 5	B	232	237	parallel
Strand 6	B	172	176	parallel
Strand 7	B	207	210	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	387	first strand
Strand 2	B	390	395	anti-parallel
Strand 3	B	421	427	anti-parallel
Strand 4	B	416	418	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	75	78	anti-parallel
Strand 3	C	83	86	anti-parallel
Strand 4	C	413	414	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	147	first strand
Strand 2	C	310	315	anti-parallel
Strand 3	C	295	298	anti-parallel
Strand 4	C	267	271	parallel
Strand 5	C	232	237	parallel
Strand 6	C	172	176	parallel
Strand 7	C	207	210	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	387	first strand
Strand 2	C	390	395	anti-parallel
Strand 3	C	421	427	anti-parallel
Strand 4	C	416	418	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	70	first strand
Strand 2	D	75	78	anti-parallel
Strand 3	D	83	86	anti-parallel
Strand 4	D	413	414	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	310	315	anti-parallel
Strand 3	D	295	298	anti-parallel
Strand 4	D	267	271	parallel
Strand 5	D	232	237	parallel
Strand 6	D	172	176	parallel
Strand 7	D	207	210	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	387	first strand
Strand 2	D	390	395	anti-parallel
Strand 3	D	421	427	anti-parallel
Strand 4	D	416	418	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	70	first strand
Strand 2	I	75	78	anti-parallel
Strand 3	I	83	86	anti-parallel
Strand 4	I	413	414	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	141	147	first strand
Strand 2	I	310	315	anti-parallel
Strand 3	I	295	298	anti-parallel
Strand 4	I	267	271	parallel
Strand 5	I	232	237	parallel
Strand 6	I	172	176	parallel
Strand 7	I	207	210	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	381	387	first strand
Strand 2	I	390	395	anti-parallel
Strand 3	I	421	427	anti-parallel
Strand 4	I	416	418	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	67	70	first strand
Strand 2	J	75	78	anti-parallel
Strand 3	J	83	86	anti-parallel
Strand 4	J	413	414	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	141	147	first strand
Strand 2	J	310	315	anti-parallel
Strand 3	J	295	298	anti-parallel
Strand 4	J	267	271	parallel
Strand 5	J	232	237	parallel
Strand 6	J	172	176	parallel
Strand 7	J	207	210	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	381	387	first strand
Strand 2	J	390	395	anti-parallel
Strand 3	J	421	427	anti-parallel
Strand 4	J	416	418	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	67	70	first strand
Strand 2	M	75	78	anti-parallel
Strand 3	M	83	86	anti-parallel
Strand 4	M	413	414	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	141	147	first strand
Strand 2	M	310	315	anti-parallel
Strand 3	M	295	298	anti-parallel
Strand 4	M	267	271	parallel
Strand 5	M	232	237	parallel
Strand 6	M	172	176	parallel
Strand 7	M	207	210	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	381	387	first strand
Strand 2	M	390	395	anti-parallel
Strand 3	M	421	427	anti-parallel
Strand 4	M	416	418	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	67	70	first strand
Strand 2	N	75	78	anti-parallel
Strand 3	N	83	86	anti-parallel
Strand 4	N	413	414	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	141	147	first strand
Strand 2	N	310	315	anti-parallel
Strand 3	N	295	298	anti-parallel
Strand 4	N	267	271	parallel
Strand 5	N	232	237	parallel
Strand 6	N	172	176	parallel
Strand 7	N	207	210	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	381	387	first strand
Strand 2	N	390	395	anti-parallel
Strand 3	N	421	427	anti-parallel
Strand 4	N	416	418	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H7D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H7D