Analysis of interatomic Contacts of Structural Units in PDB entry:
5H7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H7J entry

There are 2 chains in PDB entry 5H7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	PHE 735
B	ILE 11	PRO 733

There are 57 helices in PDB entry 5H7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	19	Right-handed alpha
Helix 2	AA2	A	20	22	Right-handed 310
Helix 3	AA3	A	36	47	Right-handed alpha
Helix 4	AA4	A	104	115	Right-handed alpha
Helix 5	AA5	A	129	142	Right-handed alpha
Helix 6	AA6	A	152	159	Right-handed alpha
Helix 7	AA7	A	163	186	Right-handed alpha
Helix 8	AA8	A	187	191	Right-handed 310
Helix 9	AA9	A	197	201	Right-handed 310
Helix 10	AB1	A	215	220	Right-handed alpha
Helix 11	AB2	A	225	235	Right-handed alpha
Helix 12	AB3	A	237	245	Right-handed alpha
Helix 13	AB4	A	246	259	Right-handed alpha
Helix 14	AB5	A	261	274	Right-handed alpha
Helix 15	AB6	A	280	288	Right-handed alpha
Helix 16	AB7	A	405	407	Right-handed 310
Helix 17	AB8	A	408	420	Right-handed alpha
Helix 18	AB9	A	440	453	Right-handed alpha
Helix 19	AC1	A	498	507	Right-handed alpha
Helix 20	AC2	A	517	528	Right-handed alpha
Helix 21	AC3	A	531	536	Right-handed alpha
Helix 22	AC4	A	556	574	Right-handed alpha
Helix 23	AC5	A	597	601	Right-handed 310
Helix 24	AC6	A	602	620	Right-handed alpha
Helix 25	AC7	A	640	651	Right-handed alpha
Helix 26	AC8	A	674	676	Right-handed 310
Helix 27	AC9	A	678	687	Right-handed alpha
Helix 28	AD1	A	704	719	Right-handed alpha
Helix 29	AD2	A	727	732	Right-handed alpha
Helix 30	AD3	B	12	19	Right-handed alpha
Helix 31	AD4	B	20	22	Right-handed 310
Helix 32	AD5	B	36	48	Right-handed alpha
Helix 33	AD6	B	106	113	Right-handed alpha
Helix 34	AD7	B	129	142	Right-handed alpha
Helix 35	AD8	B	152	159	Right-handed alpha
Helix 36	AD9	B	163	186	Right-handed alpha
Helix 37	AE1	B	187	191	Right-handed 310
Helix 38	AE2	B	215	223	Right-handed alpha
Helix 39	AE3	B	225	236	Right-handed alpha
Helix 40	AE4	B	237	245	Right-handed alpha
Helix 41	AE5	B	246	259	Right-handed alpha
Helix 42	AE6	B	261	274	Right-handed alpha
Helix 43	AE7	B	281	288	Right-handed alpha
Helix 44	AE8	B	402	404	Right-handed 310
Helix 45	AE9	B	405	419	Right-handed alpha
Helix 46	AF1	B	440	455	Right-handed alpha
Helix 47	AF2	B	498	507	Right-handed alpha
Helix 48	AF3	B	517	528	Right-handed alpha
Helix 49	AF4	B	531	536	Right-handed alpha
Helix 50	AF5	B	556	574	Right-handed alpha
Helix 51	AF6	B	597	601	Right-handed 310
Helix 52	AF7	B	602	620	Right-handed alpha
Helix 53	AF8	B	640	650	Right-handed alpha
Helix 54	AF9	B	674	676	Right-handed 310
Helix 55	AG1	B	678	687	Right-handed alpha
Helix 56	AG2	B	704	719	Right-handed alpha
Helix 57	AG3	B	727	732	Right-handed alpha

There are 16 sheets in PDB entry 5H7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	86	first strand
Strand 2	A	89	96	anti-parallel
Strand 3	A	24	31	parallel
Strand 4	A	117	123	parallel
Strand 5	A	145	151	parallel
Strand 6	A	203	207	parallel
Strand 7	A	212	214	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	338	first strand
Strand 2	A	325	329	anti-parallel
Strand 3	A	374	376	anti-parallel
Strand 4	A	296	303	anti-parallel
Strand 5	A	311	318	anti-parallel
Strand 6	A	360	364	anti-parallel
Strand 7	A	341	345	anti-parallel
Strand 8	A	348	351	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	321	first strand
Strand 2	A	355	356	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	425	first strand
Strand 2	A	435	438	anti-parallel
Strand 3	A	394	400	anti-parallel
Strand 4	A	459	461	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	425	first strand
Strand 2	A	435	438	anti-parallel
Strand 3	A	394	400	anti-parallel
Strand 4	A	465	466	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	472	first strand
Strand 2	A	623	637	anti-parallel
Strand 3	A	664	672	anti-parallel
Strand 4	A	654	661	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	472	first strand
Strand 2	A	623	637	anti-parallel
Strand 3	A	692	702	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	482	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	585	593	anti-parallel
Strand 4	A	545	549	parallel
Strand 5	A	538	542	anti-parallel
Strand 6	A	513	514	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	86	first strand
Strand 2	B	89	96	anti-parallel
Strand 3	B	24	31	parallel
Strand 4	B	117	123	parallel
Strand 5	B	145	151	parallel
Strand 6	B	203	207	parallel
Strand 7	B	212	214	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	338	first strand
Strand 2	B	325	329	anti-parallel
Strand 3	B	374	376	anti-parallel
Strand 4	B	296	302	anti-parallel
Strand 5	B	312	318	anti-parallel
Strand 6	B	360	363	anti-parallel
Strand 7	B	341	345	anti-parallel
Strand 8	B	348	352	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	322	first strand
Strand 2	B	354	356	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	433	438	anti-parallel
Strand 3	B	394	400	anti-parallel
Strand 4	B	459	461	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	426	first strand
Strand 2	B	433	438	anti-parallel
Strand 3	B	394	400	anti-parallel
Strand 4	B	465	466	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	471	first strand
Strand 2	B	624	637	anti-parallel
Strand 3	B	664	672	anti-parallel
Strand 4	B	654	661	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	471	first strand
Strand 2	B	624	637	anti-parallel
Strand 3	B	692	702	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	482	first strand
Strand 2	B	489	496	anti-parallel
Strand 3	B	585	593	anti-parallel
Strand 4	B	545	549	parallel
Strand 5	B	538	542	anti-parallel
Strand 6	B	513	514	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H7J