Analysis of interatomic Contacts of Structural Units in PDB entry:
5H7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H7S entry

There are 6 chains in PDB entry 5H7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 MET 1GLY 76
D
 PRO 2GLY 125
A
 LEU 4ASN 151
F
 MET 1GLY 76
B
 PRO 2GLY 125
C
 LEU 4ASN 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5H7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
22 35Right-handed alpha
Helix 2
AA2
E
37 41Right-handed 310
Helix 3
AA3
E
56 60Right-handed 310
Helix 4
AA4
D
26 30Right-handed 310
Helix 5
AA5
D
52 62Right-handed alpha
Helix 6
AA6
D
73 77Right-handed 310
Helix 7
AA7
D
81 90Right-handed alpha
Helix 8
AA8
D
109 118Right-handed alpha
Helix 9
AA9
D
118 124Right-handed alpha
Helix 10
AB1
A
5 17Right-handed alpha
Helix 11
AB2
A
88 92Right-handed 310
Helix 12
AB3
A
100 113Right-handed alpha
Helix 13
AB4
A
122 132Right-handed alpha
Helix 14
AB5
A
132 149Right-handed alpha
Helix 15
AB6
F
22 35Right-handed alpha
Helix 16
AB7
F
37 41Right-handed 310
Helix 17
AB8
F
56 60Right-handed 310
Helix 18
AB9
B
26 30Right-handed 310
Helix 19
AC1
B
52 62Right-handed alpha
Helix 20
AC2
B
73 77Right-handed 310
Helix 21
AC3
B
81 90Right-handed alpha
Helix 22
AC4
B
109 118Right-handed alpha
Helix 23
AC5
B
118 124Right-handed alpha
Helix 24
AC6
C
5 17Right-handed alpha
Helix 25
AC7
C
88 92Right-handed 310
Helix 26
AC8
C
100 113Right-handed alpha
Helix 27
AC9
C
122 132Right-handed alpha
Helix 28
AD1
C
132 149Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5H7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 6anti-parallel
Strand 3
E
66 70parallel
Strand 4
E
42 45anti-parallel
Strand 5
E
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 51first strand
Strand 2
D
41 43anti-parallel
Strand 3
D
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 27first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
51 57anti-parallel
Strand 4
A
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 16first strand
Strand 2
F
2 6anti-parallel
Strand 3
F
66 70parallel
Strand 4
F
42 45anti-parallel
Strand 5
F
48 49anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
41 43anti-parallel
Strand 3
B
78 79anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 27first strand
Strand 2
C
34 40anti-parallel
Strand 3
C
51 57anti-parallel
Strand 4
C
68 71anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il