Analysis of interatomic Contacts of Structural Units in PDB entry:
5H7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H7Y entry

There are 2 chains in PDB entry 5H7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 34THR 332
B
 ASP 83LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5H7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 90Right-handed alpha
Helix 2
AA2
A
152 164Right-handed alpha
Helix 3
AA3
A
222 238Right-handed alpha
Helix 4
AA4
A
312 325Right-handed alpha
Helix 5
AA5
B
84 94Right-handed alpha
Helix 6
AA6
B
98 107Right-handed alpha
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There are 3 sheets in PDB entry 5H7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
328 329anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
111 115anti-parallel
Strand 3
A
125 132anti-parallel
Strand 4
A
139 146anti-parallel
Strand 5
A
65 70anti-parallel
Strand 6
A
55 62anti-parallel
Strand 7
A
194 201anti-parallel
Strand 8
A
208 215anti-parallel
Strand 9
A
288 295anti-parallel
Strand 10
A
268 277anti-parallel
Strand 11
A
257 265anti-parallel
Strand 12
A
241 248anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
184 187anti-parallel
Strand 3
A
178 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il