Analysis of interatomic Contacts of Structural Units in PDB entry:
5H80

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H80 entry

There are 2 chains in PDB entry 5H80 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASP 464
B	THR 2	ASP 464

There are 42 helices in PDB entry 5H80. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	24	Right-handed alpha
Helix 2	AA2	A	33	37	Right-handed 310
Helix 3	AA3	A	39	45	Right-handed alpha
Helix 4	AA4	A	55	60	Right-handed alpha
Helix 5	AA5	A	61	72	Right-handed alpha
Helix 6	AA6	A	87	97	Right-handed alpha
Helix 7	AA7	A	105	113	Right-handed alpha
Helix 8	AA8	A	114	125	Right-handed alpha
Helix 9	AA9	A	141	149	Right-handed alpha
Helix 10	AB1	A	172	174	Right-handed 310
Helix 11	AB2	A	175	182	Right-handed alpha
Helix 12	AB3	A	246	264	Right-handed alpha
Helix 13	AB4	A	294	303	Right-handed alpha
Helix 14	AB5	A	305	315	Right-handed alpha
Helix 15	AB6	A	318	323	Right-handed alpha
Helix 16	AB7	A	403	417	Right-handed alpha
Helix 17	AB8	A	426	436	Right-handed alpha
Helix 18	AB9	A	436	442	Right-handed alpha
Helix 19	AC1	A	447	452	Right-handed alpha
Helix 20	AC2	A	452	461	Right-handed alpha
Helix 21	AC3	A	462	464	Right-handed 310
Helix 22	AC4	B	10	24	Right-handed alpha
Helix 23	AC5	B	33	37	Right-handed 310
Helix 24	AC6	B	39	45	Right-handed alpha
Helix 25	AC7	B	56	61	Right-handed alpha
Helix 26	AC8	B	61	72	Right-handed alpha
Helix 27	AC9	B	87	97	Right-handed alpha
Helix 28	AD1	B	105	114	Right-handed alpha
Helix 29	AD2	B	114	126	Right-handed alpha
Helix 30	AD3	B	138	149	Right-handed alpha
Helix 31	AD4	B	172	174	Right-handed 310
Helix 32	AD5	B	175	181	Right-handed alpha
Helix 33	AD6	B	246	264	Right-handed alpha
Helix 34	AD7	B	294	303	Right-handed alpha
Helix 35	AD8	B	305	315	Right-handed alpha
Helix 36	AD9	B	318	323	Right-handed alpha
Helix 37	AE1	B	403	417	Right-handed alpha
Helix 38	AE2	B	426	436	Right-handed alpha
Helix 39	AE3	B	436	442	Right-handed alpha
Helix 40	AE4	B	447	452	Right-handed alpha
Helix 41	AE5	B	452	461	Right-handed alpha
Helix 42	AE6	B	462	464	Right-handed 310

There are 10 sheets in PDB entry 5H80. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	27	32	parallel
Strand 3	A	4	7	parallel
Strand 4	A	76	78	parallel
Strand 5	A	100	101	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	199	200	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	226	first strand
Strand 2	A	206	215	anti-parallel
Strand 3	A	267	276	anti-parallel
Strand 4	A	282	288	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	234	235	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	337	344	anti-parallel
Strand 3	A	391	399	anti-parallel
Strand 4	A	372	376	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	365	first strand
Strand 2	A	419	421	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	27	32	parallel
Strand 3	B	4	7	parallel
Strand 4	B	76	78	parallel
Strand 5	B	100	101	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	197	200	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	288	first strand
Strand 2	B	267	276	anti-parallel
Strand 3	B	206	215	anti-parallel
Strand 4	B	219	231	anti-parallel
Strand 5	B	234	240	anti-parallel
Strand 6	B	337	344	anti-parallel
Strand 7	B	391	399	anti-parallel
Strand 8	B	372	376	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	365	first strand
Strand 2	B	419	421	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H80

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H80