Analysis of interatomic Contacts of Structural Units in PDB entry:
5H81


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H81 entry

There are 2 chains in PDB entry 5H81 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8SER 370
B
 PRO 8SER 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5H81. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
104 109Right-handed alpha
Helix 3
AA3
A
110 115Right-handed 310
Helix 4
AA4
A
158 160Right-handed 310
Helix 5
AA5
A
168 173Right-handed alpha
Helix 6
AA6
A
174 179Right-handed alpha
Helix 7
AA7
A
179 189Right-handed alpha
Helix 8
AA8
A
204 217Right-handed alpha
Helix 9
AA9
A
227 229Right-handed 310
Helix 10
AB1
A
230 239Right-handed alpha
Helix 11
AB2
A
248 255Right-handed alpha
Helix 12
AB3
A
272 277Right-handed alpha
Helix 13
AB4
A
301 305Right-handed alpha
Helix 14
AB5
A
316 330Right-handed alpha
Helix 15
AB6
A
340 342Right-handed 310
Helix 16
AB7
A
343 354Right-handed alpha
Helix 17
AB8
A
364 368Right-handed alpha
Helix 18
AB9
B
48 56Right-handed alpha
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
110 115Right-handed 310
Helix 21
AC3
B
140 144Right-handed 310
Helix 22
AC4
B
158 160Right-handed 310
Helix 23
AC5
B
168 173Right-handed alpha
Helix 24
AC6
B
174 179Right-handed alpha
Helix 25
AC7
B
179 189Right-handed alpha
Helix 26
AC8
B
204 217Right-handed alpha
Helix 27
AC9
B
227 229Right-handed 310
Helix 28
AD1
B
230 239Right-handed alpha
Helix 29
AD2
B
248 255Right-handed alpha
Helix 30
AD3
B
272 277Right-handed alpha
Helix 31
AD4
B
301 305Right-handed alpha
Helix 32
AD5
B
316 330Right-handed alpha
Helix 33
AD6
B
340 342Right-handed 310
Helix 34
AD7
B
343 354Right-handed alpha
Helix 35
AD8
B
364 368Right-handed alpha
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There are 10 sheets in PDB entry 5H81. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 16first strand
Strand 2
A
23 30anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
37 46anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
91 94anti-parallel
Strand 5
A
161 162anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 156first strand
Strand 2
A
37 46anti-parallel
Strand 3
A
359 363anti-parallel
Strand 4
A
336 339parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
220 225parallel
Strand 3
A
197 201parallel
Strand 4
A
259 264parallel
Strand 5
A
279 287parallel
Strand 6
A
308 311parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 16first strand
Strand 2
B
23 30anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
37 46anti-parallel
Strand 3
B
72 79anti-parallel
Strand 4
B
91 94anti-parallel
Strand 5
B
161 162anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
37 46anti-parallel
Strand 3
B
359 363anti-parallel
Strand 4
B
336 339parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
119 120anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
133 134anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 245first strand
Strand 2
B
220 225parallel
Strand 3
B
197 201parallel
Strand 4
B
259 264parallel
Strand 5
B
279 287parallel
Strand 6
B
308 311parallel
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