Analysis of interatomic Contacts of Structural Units in PDB entry:
5H83

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H83 entry

There are 2 chains in PDB entry 5H83 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	PRO 357
B	TYR 10	PHE 359

There are 33 helices in PDB entry 5H83. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	10	Right-handed alpha
Helix 2	AA2	A	51	59	Right-handed alpha
Helix 3	AA3	A	107	112	Right-handed alpha
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	144	146	Right-handed 310
Helix 6	AA6	A	154	159	Right-handed alpha
Helix 7	AA7	A	160	162	Right-handed 310
Helix 8	AA8	A	163	175	Right-handed alpha
Helix 9	AA9	A	190	204	Right-handed alpha
Helix 10	AB1	A	214	225	Right-handed alpha
Helix 11	AB2	A	234	241	Right-handed alpha
Helix 12	AB3	A	258	264	Right-handed alpha
Helix 13	AB4	A	284	290	Right-handed alpha
Helix 14	AB5	A	302	316	Right-handed alpha
Helix 15	AB6	A	326	328	Right-handed 310
Helix 16	AB7	A	329	339	Right-handed alpha
Helix 17	AB8	A	350	354	Right-handed alpha
Helix 18	AB9	B	51	59	Right-handed alpha
Helix 19	AC1	B	107	112	Right-handed alpha
Helix 20	AC2	B	114	118	Right-handed 310
Helix 21	AC3	B	144	146	Right-handed 310
Helix 22	AC4	B	154	159	Right-handed alpha
Helix 23	AC5	B	160	162	Right-handed 310
Helix 24	AC6	B	163	175	Right-handed alpha
Helix 25	AC7	B	190	204	Right-handed alpha
Helix 26	AC8	B	213	225	Right-handed alpha
Helix 27	AC9	B	234	240	Right-handed alpha
Helix 28	AD1	B	258	264	Right-handed alpha
Helix 29	AD2	B	284	290	Right-handed alpha
Helix 30	AD3	B	302	316	Right-handed alpha
Helix 31	AD4	B	326	328	Right-handed 310
Helix 32	AD5	B	329	340	Right-handed alpha
Helix 33	AD6	B	350	354	Right-handed alpha

There are 10 sheets in PDB entry 5H83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	19	first strand
Strand 2	A	26	33	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	40	49	anti-parallel
Strand 3	A	75	82	anti-parallel
Strand 4	A	94	97	anti-parallel
Strand 5	A	147	149	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	40	49	anti-parallel
Strand 3	A	345	349	anti-parallel
Strand 4	A	322	325	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	122	123	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	231	first strand
Strand 2	A	206	211	parallel
Strand 3	A	183	187	parallel
Strand 4	A	245	250	parallel
Strand 5	A	265	273	parallel
Strand 6	A	294	297	parallel
Strand 7	B	294	297	anti-parallel
Strand 8	B	265	273	parallel
Strand 9	B	245	250	parallel
Strand 10	B	183	187	parallel
Strand 11	B	206	211	parallel
Strand 12	B	228	231	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	283	first strand
Strand 2	B	281	283	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	19	first strand
Strand 2	B	26	33	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	40	49	anti-parallel
Strand 3	B	75	82	anti-parallel
Strand 4	B	94	97	anti-parallel
Strand 5	B	147	148	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	142	first strand
Strand 2	B	40	49	anti-parallel
Strand 3	B	345	349	anti-parallel
Strand 4	B	322	325	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	122	123	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H83

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H83