Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H8C entry

There is 1 chain in PDB entry 5H8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8VAL 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5H8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 21Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
56 58Right-handed 310
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
83 88Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
101 105Right-handed 310
Helix 8
AA8
A
119 135Right-handed alpha
Helix 9
AA9
A
137 149Right-handed alpha
Helix 10
AB1
A
156 161Right-handed alpha
Helix 11
AB2
A
161 166Right-handed alpha
Helix 12
AB3
A
171 173Right-handed 310
Helix 13
AB4
A
181 191Right-handed 310
Helix 14
AB5
A
197 208Right-handed alpha
Helix 15
AB6
A
210 228Right-handed alpha
Helix 16
AB7
A
244 265Right-handed alpha
Helix 17
AB8
A
271 282Right-handed alpha
Helix 18
AB9
A
303 309Right-handed alpha
Helix 19
AC1
A
310 313Right-handed 310
Helix 20
AC2
A
327 334Right-handed alpha
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There are 2 sheets in PDB entry 5H8C. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
151 155parallel
Strand 3
A
49 54parallel
Strand 4
A
175 179parallel
Strand 5
A
317 322parallel
Strand 6
A
24 28parallel
Strand 7
A
341 345parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
296 298anti-parallel
Strand 3
A
291 293anti-parallel
Strand 4
A
235 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il