Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H8M entry

There is 1 chain in PDB entry 5H8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 726
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5H8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
31 69Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
106 111Right-handed alpha
Helix 5
AA5
A
123 133Right-handed alpha
Helix 6
AA6
A
138 145Right-handed alpha
Helix 7
AA7
A
161 180Right-handed alpha
Helix 8
AA8
A
213 215Right-handed 310
Helix 9
AA9
A
280 297Right-handed alpha
Helix 10
AB1
A
360 373Right-handed alpha
Helix 11
AB2
A
374 377Right-handed 310
Helix 12
AB3
A
401 420Right-handed alpha
Helix 13
AB4
A
435 440Right-handed alpha
Helix 14
AB5
A
441 449Right-handed alpha
Helix 15
AB6
A
459 471Right-handed alpha
Helix 16
AB7
A
479 484Right-handed alpha
Helix 17
AB8
A
486 502Right-handed alpha
Helix 18
AB9
A
521 529Right-handed alpha
Helix 19
AC1
A
530 532Right-handed 310
Helix 20
AC2
A
544 558Right-handed alpha
Helix 21
AC3
A
559 568Right-handed alpha
Helix 22
AC4
A
574 579Right-handed alpha
Helix 23
AC5
A
590 616Right-handed alpha
Helix 24
AC6
A
633 650Right-handed alpha
Helix 25
AC7
A
654 671Right-handed alpha
Helix 26
AC8
A
689 701Right-handed alpha
Helix 27
AC9
A
705 709Right-handed 310
Helix 28
AD1
A
710 723Right-handed alpha
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There are 6 sheets in PDB entry 5H8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
10 13anti-parallel
Strand 3
A
346 352anti-parallel
Strand 4
A
357 359anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 120first strand
Strand 2
A
267 271parallel
Strand 3
A
335 339parallel
Strand 4
A
393 397parallel
Strand 5
A
427 431parallel
Strand 6
A
453 457parallel
Strand 7
A
510 515parallel
Strand 8
A
539 542parallel
Strand 9
A
114 120parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
237 243anti-parallel
Strand 4
A
226 234anti-parallel
Strand 5
A
217 223anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
208 210anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
327 330anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 623first strand
Strand 2
A
629 632anti-parallel
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