Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H8N entry

There are 2 chains in PDB entry 5H8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 6CYS 283
B
THR 5GLN 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 5H8N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
60 74Right-handed alpha
Helix 2
AA2
A
96 104Right-handed alpha
Helix 3
AA3
A
117 122Right-handed alpha
Helix 4
AA4
A
150 155Right-handed alpha
Helix 5
AA5
A
156 159Right-handed 310
Helix 6
AA6
A
171 181Right-handed alpha
Helix 7
AA7
A
181 189Right-handed alpha
Helix 8
AA8
A
190 192Right-handed 310
Helix 9
AA9
A
195 205Right-handed alpha
Helix 10
AB1
A
215 224Right-handed alpha
Helix 11
AB2
A
254 268Right-handed alpha
Helix 12
AB3
A
269 280Right-handed alpha
Helix 13
AB4
B
66 80Right-handed alpha
Helix 14
AB5
B
108 116Right-handed alpha
Helix 15
AB6
B
129 134Right-handed alpha
Helix 16
AB7
B
162 167Right-handed alpha
Helix 17
AB8
B
180 189Right-handed alpha
Helix 18
AB9
B
192 200Right-handed alpha
Helix 19
AC1
B
206 216Right-handed alpha
Helix 20
AC2
B
226 236Right-handed alpha
Helix 21
AC3
B
261 275Right-handed alpha
Helix 22
AC4
B
276 286Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 5H8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
20 23first strand
Strand 2
A
51 59anti-parallel
Strand 3
A
36 43anti-parallel
Strand 4
A
76 81parallel
Strand 5
A
7 12parallel
Strand 6
A
109 110parallel
Strand 7
A
247 248anti-parallel
Strand 8
A
125 126anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
90 91first strand
Strand 2
A
94 95anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 166first strand
Strand 2
A
210 214parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
230 232anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 166first strand
Strand 2
A
210 214parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
239 244anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 22first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
43 48anti-parallel
Strand 4
B
82 87parallel
Strand 5
B
6 11parallel
Strand 6
B
121 122parallel
Strand 7
B
254 256anti-parallel
Strand 8
B
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 98first strand
Strand 2
B
105 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
174 175first strand
Strand 2
B
221 225parallel
Strand 3
B
143 152anti-parallel
Strand 4
B
239 251anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il