Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H8S entry

There are 3 chains in PDB entry 5H8S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	CYS 261
C	GLY 1	GLY 262
B	ASN 3	CYS 261

There are 35 helices in PDB entry 5H8S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	27	30	Right-handed 310
Helix 3	AA3	A	34	48	Right-handed alpha
Helix 4	AA4	A	72	80	Right-handed alpha
Helix 5	AA5	A	93	98	Right-handed alpha
Helix 6	AA6	A	123	129	Right-handed alpha
Helix 7	AA7	A	141	150	Right-handed alpha
Helix 8	AA8	A	152	165	Right-handed alpha
Helix 9	AA9	A	173	184	Right-handed alpha
Helix 10	AB1	A	194	202	Right-handed alpha
Helix 11	AB2	A	230	244	Right-handed alpha
Helix 12	AB3	A	245	256	Right-handed alpha
Helix 13	AB4	C	28	30	Right-handed 310
Helix 14	AB5	C	34	48	Right-handed alpha
Helix 15	AB6	C	72	80	Right-handed alpha
Helix 16	AB7	C	93	98	Right-handed alpha
Helix 17	AB8	C	123	129	Right-handed alpha
Helix 18	AB9	C	141	150	Right-handed alpha
Helix 19	AC1	C	152	165	Right-handed alpha
Helix 20	AC2	C	173	184	Right-handed alpha
Helix 21	AC3	C	194	202	Right-handed alpha
Helix 22	AC4	C	230	244	Right-handed alpha
Helix 23	AC5	C	245	256	Right-handed alpha
Helix 24	AC6	B	22	26	Right-handed 310
Helix 25	AC7	B	27	30	Right-handed 310
Helix 26	AC8	B	34	48	Right-handed alpha
Helix 27	AC9	B	72	80	Right-handed alpha
Helix 28	AD1	B	93	98	Right-handed alpha
Helix 29	AD2	B	123	129	Right-handed alpha
Helix 30	AD3	B	141	149	Right-handed alpha
Helix 31	AD4	B	152	165	Right-handed alpha
Helix 32	AD5	B	173	184	Right-handed alpha
Helix 33	AD6	B	194	202	Right-handed alpha
Helix 34	AD7	B	230	244	Right-handed alpha
Helix 35	AD8	B	245	256	Right-handed alpha

There are 15 sheets in PDB entry 5H8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	6	10	parallel
Strand 3	A	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	A	32	33	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	137	first strand
Strand 2	A	188	193	parallel
Strand 3	A	111	116	anti-parallel
Strand 4	A	208	211	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	6	10	parallel
Strand 3	C	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	32	33	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	109	first strand
Strand 2	C	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	137	first strand
Strand 2	C	188	193	parallel
Strand 3	C	111	116	anti-parallel
Strand 4	C	208	211	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	6	10	parallel
Strand 3	B	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	32	33	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	223	225	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	109	first strand
Strand 2	B	218	220	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	137	first strand
Strand 2	B	188	193	parallel
Strand 3	B	111	116	anti-parallel
Strand 4	B	208	211	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H8S

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8S