Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H8U entry

There are 2 chains in PDB entry 5H8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 727
B	ASP 3	GLU 727

There are 64 helices in PDB entry 5H8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	31	70	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	106	111	Right-handed alpha
Helix 5	AA5	A	123	132	Right-handed alpha
Helix 6	AA6	A	138	145	Right-handed alpha
Helix 7	AA7	A	161	180	Right-handed alpha
Helix 8	AA8	A	186	190	Right-handed 310
Helix 9	AA9	A	213	215	Right-handed 310
Helix 10	AB1	A	280	297	Right-handed alpha
Helix 11	AB2	A	360	372	Right-handed alpha
Helix 12	AB3	A	373	377	Right-handed 310
Helix 13	AB4	A	402	421	Right-handed alpha
Helix 14	AB5	A	435	441	Right-handed alpha
Helix 15	AB6	A	441	449	Right-handed alpha
Helix 16	AB7	A	459	471	Right-handed alpha
Helix 17	AB8	A	472	475	Right-handed 310
Helix 18	AB9	A	479	485	Right-handed 310
Helix 19	AC1	A	486	503	Right-handed alpha
Helix 20	AC2	A	521	529	Right-handed alpha
Helix 21	AC3	A	530	535	Right-handed alpha
Helix 22	AC4	A	544	558	Right-handed alpha
Helix 23	AC5	A	559	566	Right-handed alpha
Helix 24	AC6	A	574	579	Right-handed alpha
Helix 25	AC7	A	590	614	Right-handed alpha
Helix 26	AC8	A	633	650	Right-handed alpha
Helix 27	AC9	A	654	673	Right-handed alpha
Helix 28	AD1	A	685	688	Right-handed 310
Helix 29	AD2	A	689	701	Right-handed alpha
Helix 30	AD3	A	702	709	Right-handed 310
Helix 31	AD4	A	710	724	Right-handed alpha
Helix 32	AD5	B	13	23	Right-handed alpha
Helix 33	AD6	B	33	47	Right-handed alpha
Helix 34	AD7	B	47	70	Right-handed alpha
Helix 35	AD8	B	77	88	Right-handed alpha
Helix 36	AD9	B	106	111	Right-handed alpha
Helix 37	AE1	B	123	132	Right-handed alpha
Helix 38	AE2	B	138	144	Right-handed alpha
Helix 39	AE3	B	161	180	Right-handed alpha
Helix 40	AE4	B	186	190	Right-handed 310
Helix 41	AE5	B	213	215	Right-handed 310
Helix 42	AE6	B	248	252	Right-handed 310
Helix 43	AE7	B	280	297	Right-handed alpha
Helix 44	AE8	B	359	373	Right-handed alpha
Helix 45	AE9	B	374	376	Right-handed 310
Helix 46	AF1	B	401	420	Right-handed alpha
Helix 47	AF2	B	435	440	Right-handed alpha
Helix 48	AF3	B	441	448	Right-handed alpha
Helix 49	AF4	B	459	471	Right-handed alpha
Helix 50	AF5	B	472	475	Right-handed 310
Helix 51	AF6	B	482	485	Right-handed 310
Helix 52	AF7	B	486	503	Right-handed alpha
Helix 53	AF8	B	522	529	Right-handed alpha
Helix 54	AF9	B	530	535	Right-handed alpha
Helix 55	AG1	B	544	556	Right-handed alpha
Helix 56	AG2	B	559	567	Right-handed alpha
Helix 57	AG3	B	574	579	Right-handed alpha
Helix 58	AG4	B	590	613	Right-handed alpha
Helix 59	AG5	B	633	650	Right-handed alpha
Helix 60	AG6	B	654	673	Right-handed alpha
Helix 61	AG7	B	685	688	Right-handed 310
Helix 62	AG8	B	689	701	Right-handed alpha
Helix 63	AG9	B	705	709	Right-handed 310
Helix 64	AH1	B	711	725	Right-handed alpha

There are 13 sheets in PDB entry 5H8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	10	12	anti-parallel
Strand 3	A	346	351	anti-parallel
Strand 4	A	357	359	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	120	first strand
Strand 2	A	267	271	parallel
Strand 3	A	335	339	parallel
Strand 4	A	393	396	parallel
Strand 5	A	427	433	parallel
Strand 6	A	453	458	parallel
Strand 7	A	510	515	parallel
Strand 8	A	539	542	parallel
Strand 9	A	114	120	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	237	243	anti-parallel
Strand 4	A	227	234	anti-parallel
Strand 5	A	217	222	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	208	209	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	302	first strand
Strand 2	A	311	313	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	327	330	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	623	first strand
Strand 2	A	629	632	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	267	271	parallel
Strand 3	B	335	339	parallel
Strand 4	B	393	397	parallel
Strand 5	B	427	433	parallel
Strand 6	B	453	458	parallel
Strand 7	B	510	513	parallel
Strand 8	B	539	542	parallel
Strand 9	B	116	120	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	257	263	anti-parallel
Strand 3	B	237	243	anti-parallel
Strand 4	B	226	234	anti-parallel
Strand 5	B	217	223	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	199	203	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	301	first strand
Strand 2	B	312	313	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	327	330	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	620	623	first strand
Strand 2	B	629	632	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8U