Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H8V entry

There are 2 chains in PDB entry 5H8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 63TRP 628
B
 LYS 63TRP 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5H8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 73Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
93 103Right-handed alpha
Helix 4
AA4
A
127 129Right-handed 310
Helix 5
AA5
A
133 148Right-handed alpha
Helix 6
AA6
A
166 168Right-handed 310
Helix 7
AA7
A
169 179Right-handed alpha
Helix 8
AA8
A
204 221Right-handed alpha
Helix 9
AA9
A
226 234Right-handed alpha
Helix 10
AB1
A
244 253Right-handed alpha
Helix 11
AB2
A
290 294Right-handed 310
Helix 12
AB3
A
343 359Right-handed alpha
Helix 13
AB4
A
363 367Right-handed 310
Helix 14
AB5
A
368 377Right-handed alpha
Helix 15
AB6
A
377 390Right-handed alpha
Helix 16
AB7
A
424 426Right-handed 310
Helix 17
AB8
A
430 444Right-handed alpha
Helix 18
AB9
A
462 464Right-handed 310
Helix 19
AC1
A
465 476Right-handed alpha
Helix 20
AC2
A
480 484Right-handed 310
Helix 21
AC3
A
485 491Right-handed alpha
Helix 22
AC4
A
507 526Right-handed alpha
Helix 23
AC5
A
546 550Right-handed 310
Helix 24
AC6
A
587 603Right-handed alpha
Helix 25
AC7
A
608 617Right-handed alpha
Helix 26
AC8
A
617 628Right-handed alpha
Helix 27
AC9
B
65 73Right-handed alpha
Helix 28
AD1
B
80 85Right-handed alpha
Helix 29
AD2
B
93 101Right-handed alpha
Helix 30
AD3
B
127 129Right-handed 310
Helix 31
AD4
B
133 148Right-handed alpha
Helix 32
AD5
B
166 168Right-handed 310
Helix 33
AD6
B
169 179Right-handed alpha
Helix 34
AD7
B
204 221Right-handed alpha
Helix 35
AD8
B
226 234Right-handed alpha
Helix 36
AD9
B
244 253Right-handed alpha
Helix 37
AE1
B
290 294Right-handed 310
Helix 38
AE2
B
343 359Right-handed alpha
Helix 39
AE3
B
363 367Right-handed 310
Helix 40
AE4
B
368 377Right-handed alpha
Helix 41
AE5
B
377 390Right-handed alpha
Helix 42
AE6
B
424 426Right-handed 310
Helix 43
AE7
B
430 444Right-handed alpha
Helix 44
AE8
B
462 464Right-handed 310
Helix 45
AE9
B
465 476Right-handed alpha
Helix 46
AF1
B
480 484Right-handed 310
Helix 47
AF2
B
485 491Right-handed alpha
Helix 48
AF3
B
507 526Right-handed alpha
Helix 49
AF4
B
546 550Right-handed 310
Helix 50
AF5
B
587 603Right-handed alpha
Helix 51
AF6
B
608 617Right-handed alpha
Helix 52
AF7
B
617 628Right-handed alpha
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There are 8 sheets in PDB entry 5H8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 109first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
152 154anti-parallel
Strand 5
A
428 429anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
448 450anti-parallel
Strand 3
A
456 461anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
409 412anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
296 302parallel
Strand 3
A
308 315anti-parallel
Strand 4
A
334 340anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
492 493first strand
Strand 2
A
535 538parallel
Strand 3
A
552 558parallel
Strand 4
A
561 566anti-parallel
Strand 5
A
577 584anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 109first strand
Strand 2
B
119 124anti-parallel
Strand 3
B
160 165anti-parallel
Strand 4
B
152 154anti-parallel
Strand 5
B
428 429anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
448 450anti-parallel
Strand 3
B
456 461anti-parallel
Strand 4
B
418 422anti-parallel
Strand 5
B
409 412anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 283first strand
Strand 2
B
296 302parallel
Strand 3
B
308 315anti-parallel
Strand 4
B
334 340anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
492 493first strand
Strand 2
B
535 538parallel
Strand 3
B
552 558parallel
Strand 4
B
561 566anti-parallel
Strand 5
B
577 584anti-parallel
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