Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H8W entry

There are 2 chains in PDB entry 5H8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20ARG 615
E
 T 1 A 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5H8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 50Right-handed alpha
Helix 2
AA2
A
60 78Right-handed alpha
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
93 99Right-handed alpha
Helix 5
AA5
A
105 122Right-handed alpha
Helix 6
AA6
A
132 136Right-handed 310
Helix 7
AA7
A
137 148Right-handed alpha
Helix 8
AA8
A
150 162Right-handed alpha
Helix 9
AA9
A
164 173Right-handed alpha
Helix 10
AB1
A
174 176Right-handed 310
Helix 11
AB2
A
183 187Right-handed alpha
Helix 12
AB3
A
188 200Right-handed alpha
Helix 13
AB4
A
202 204Right-handed 310
Helix 14
AB5
A
212 214Right-handed 310
Helix 15
AB6
A
215 225Right-handed alpha
Helix 16
AB7
A
230 243Right-handed alpha
Helix 17
AB8
A
254 273Right-handed alpha
Helix 18
AB9
A
282 294Right-handed alpha
Helix 19
AC1
A
296 321Right-handed alpha
Helix 20
AC2
A
327 341Right-handed alpha
Helix 21
AC3
A
366 371Right-handed alpha
Helix 22
AC4
A
372 376Right-handed 310
Helix 23
AC5
A
387 396Right-handed alpha
Helix 24
AC6
A
409 411Right-handed 310
Helix 25
AC7
A
424 428Right-handed 310
Helix 26
AC8
A
429 448Right-handed alpha
Helix 27
AC9
A
457 466Right-handed alpha
Helix 28
AD1
A
480 495Right-handed alpha
Helix 29
AD2
A
513 517Right-handed 310
Helix 30
AD3
A
531 546Right-handed alpha
Helix 31
AD4
A
547 553Right-handed alpha
Helix 32
AD5
A
553 567Right-handed alpha
Helix 33
AD6
A
583 589Right-handed 310
Helix 34
AD7
A
600 615Right-handed alpha
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There are 4 sheets in PDB entry 5H8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
178 182parallel
Strand 3
A
53 58parallel
Strand 4
A
206 210parallel
Strand 5
A
377 382parallel
Strand 6
A
24 28parallel
Strand 7
A
401 402parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
358 363anti-parallel
Strand 3
A
347 352anti-parallel
Strand 4
A
278 280anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
252 253anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
497 501parallel
Strand 3
A
451 455parallel
Strand 4
A
519 522parallel
Strand 5
A
576 581parallel
Strand 6
A
413 418parallel
Strand 7
A
596 597parallel
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