Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H8Y entry

There are 3 chains in PDB entry 5H8Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 62	TRP 628
B	LYS 63	TRP 628
C	ARG 64	TYR 202

There are110 helices in PDB entry 5H8Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	74	Right-handed alpha
Helix 2	AA2	A	80	85	Right-handed alpha
Helix 3	AA3	A	93	101	Right-handed alpha
Helix 4	AA4	A	127	129	Right-handed 310
Helix 5	AA5	A	133	148	Right-handed alpha
Helix 6	AA6	A	166	168	Right-handed 310
Helix 7	AA7	A	169	180	Right-handed alpha
Helix 8	AA8	A	204	221	Right-handed alpha
Helix 9	AA9	A	226	234	Right-handed alpha
Helix 10	AB1	A	244	252	Right-handed alpha
Helix 11	AB2	A	290	294	Right-handed 310
Helix 12	AB3	A	343	359	Right-handed alpha
Helix 13	AB4	A	363	367	Right-handed 310
Helix 14	AB5	A	368	377	Right-handed alpha
Helix 15	AB6	A	377	390	Right-handed alpha
Helix 16	AB7	A	424	426	Right-handed 310
Helix 17	AB8	A	432	444	Right-handed alpha
Helix 18	AB9	A	462	464	Right-handed 310
Helix 19	AC1	A	465	476	Right-handed alpha
Helix 20	AC2	A	480	484	Right-handed 310
Helix 21	AC3	A	485	491	Right-handed alpha
Helix 22	AC4	A	507	526	Right-handed alpha
Helix 23	AC5	A	546	550	Right-handed 310
Helix 24	AC6	A	587	603	Right-handed alpha
Helix 25	AC7	A	608	617	Right-handed alpha
Helix 26	AC8	A	617	628	Right-handed alpha
Helix 27	AC9	B	65	74	Right-handed alpha
Helix 28	AD1	B	80	85	Right-handed alpha
Helix 29	AD2	B	93	103	Right-handed alpha
Helix 30	AD3	B	127	129	Right-handed 310
Helix 31	AD4	B	133	147	Right-handed alpha
Helix 32	AD5	B	166	168	Right-handed 310
Helix 33	AD6	B	169	180	Right-handed alpha
Helix 34	AD7	B	204	221	Right-handed alpha
Helix 35	AD8	B	226	234	Right-handed alpha
Helix 36	AD9	B	244	252	Right-handed alpha
Helix 37	AE1	B	290	294	Right-handed 310
Helix 38	AE2	B	343	359	Right-handed alpha
Helix 39	AE3	B	363	367	Right-handed 310
Helix 40	AE4	B	368	377	Right-handed alpha
Helix 41	AE5	B	377	390	Right-handed alpha
Helix 42	AE6	B	424	426	Right-handed 310
Helix 43	AE7	B	432	444	Right-handed alpha
Helix 44	AE8	B	462	464	Right-handed 310
Helix 45	AE9	B	465	476	Right-handed alpha
Helix 46	AF1	B	480	484	Right-handed 310
Helix 47	AF2	B	485	491	Right-handed alpha
Helix 48	AF3	B	507	526	Right-handed alpha
Helix 49	AF4	B	546	550	Right-handed 310
Helix 50	AF5	B	587	602	Right-handed alpha
Helix 51	AF6	B	608	617	Right-handed alpha
Helix 52	AF7	B	617	628	Right-handed alpha
Helix 53	AF8	C	65	74	Right-handed alpha
Helix 54	AF9	C	80	86	Right-handed alpha
Helix 55	AG1	C	93	101	Right-handed alpha
Helix 56	AG2	C	127	129	Right-handed 310
Helix 57	AG3	C	133	148	Right-handed alpha
Helix 58	AG4	C	166	168	Right-handed 310
Helix 59	AG5	C	169	180	Right-handed alpha
Helix 60	AG6	C	204	221	Right-handed alpha
Helix 61	AG7	C	226	233	Right-handed alpha
Helix 62	AG8	C	244	253	Right-handed alpha
Helix 63	AG9	C	290	294	Right-handed 310
Helix 64	AH1	C	343	359	Right-handed alpha
Helix 65	AH2	C	363	367	Right-handed 310
Helix 66	AH3	C	368	377	Right-handed alpha
Helix 67	AH4	C	377	390	Right-handed alpha
Helix 68	AH5	C	424	426	Right-handed 310
Helix 69	AH6	C	432	444	Right-handed alpha
Helix 70	AH7	C	462	464	Right-handed 310
Helix 71	AH8	C	465	476	Right-handed alpha
Helix 72	AH9	C	480	484	Right-handed 310
Helix 73	AI1	C	485	491	Right-handed alpha
Helix 74	AI2	C	507	526	Right-handed alpha
Helix 75	AI3	C	546	550	Right-handed 310
Helix 76	AI4	C	587	603	Right-handed alpha
Helix 77	AI5	C	608	617	Right-handed alpha
Helix 78	AI6	C	617	628	Right-handed alpha
Helix 79	AI7	D	65	74	Right-handed alpha
Helix 80	AI8	D	80	85	Right-handed alpha
Helix 81	AI9	D	93	101	Right-handed alpha
Helix 82	AJ1	D	127	129	Right-handed 310
Helix 83	AJ2	D	133	148	Right-handed alpha
Helix 84	AJ3	D	166	168	Right-handed 310
Helix 85	AJ4	D	169	180	Right-handed alpha
Helix 86	AJ5	D	204	221	Right-handed alpha
Helix 87	AJ6	D	226	233	Right-handed alpha
Helix 88	AJ7	D	244	253	Right-handed alpha
Helix 89	AJ8	D	290	294	Right-handed 310
Helix 90	AJ9	D	343	358	Right-handed alpha
Helix 91	AK1	D	368	377	Right-handed alpha
Helix 92	AK2	D	377	390	Right-handed alpha
Helix 93	AK3	D	424	426	Right-handed 310
Helix 94	AK4	D	432	444	Right-handed alpha
Helix 95	AK5	D	462	464	Right-handed 310
Helix 96	AK6	D	465	476	Right-handed alpha
Helix 97	AK7	D	480	484	Right-handed 310
Helix 98	AK8	D	485	491	Right-handed alpha
Helix 99	AK9	D	507	526	Right-handed alpha
Helix 100	AL1	D	546	550	Right-handed 310
Helix 101	AL2	D	587	603	Right-handed alpha
Helix 102	AL3	D	608	617	Right-handed alpha
Helix 103	AL4	D	617	628	Right-handed alpha
Helix 104	AL5	E	23	31	Right-handed alpha
Helix 105	AL6	E	65	71	Right-handed alpha
Helix 106	AL7	E	77	79	Right-handed 310
Helix 107	AL8	E	91	95	Right-handed 310
Helix 108	AL9	F	68	71	Right-handed 310
Helix 109	AM1	F	77	79	Right-handed 310
Helix 110	AM2	F	91	96	Right-handed alpha

There are 19 sheets in PDB entry 5H8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	109	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	160	165	anti-parallel
Strand 4	A	152	154	anti-parallel
Strand 5	A	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	448	450	anti-parallel
Strand 3	A	456	461	anti-parallel
Strand 4	A	418	422	anti-parallel
Strand 5	A	409	412	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	283	first strand
Strand 2	A	296	302	parallel
Strand 3	A	308	315	anti-parallel
Strand 4	A	334	340	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	493	first strand
Strand 2	A	535	538	parallel
Strand 3	A	552	558	parallel
Strand 4	A	561	566	anti-parallel
Strand 5	A	577	584	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	109	first strand
Strand 2	B	119	124	anti-parallel
Strand 3	B	160	165	anti-parallel
Strand 4	B	152	154	anti-parallel
Strand 5	B	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	132	first strand
Strand 2	B	448	450	anti-parallel
Strand 3	B	456	461	anti-parallel
Strand 4	B	418	422	anti-parallel
Strand 5	B	409	412	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	283	first strand
Strand 2	B	296	302	parallel
Strand 3	B	308	315	anti-parallel
Strand 4	B	334	340	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	493	first strand
Strand 2	B	535	538	parallel
Strand 3	B	552	558	parallel
Strand 4	B	561	566	anti-parallel
Strand 5	B	577	584	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	109	first strand
Strand 2	C	119	124	anti-parallel
Strand 3	C	160	165	anti-parallel
Strand 4	C	152	154	anti-parallel
Strand 5	C	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	132	first strand
Strand 2	C	448	450	anti-parallel
Strand 3	C	456	461	anti-parallel
Strand 4	C	418	422	anti-parallel
Strand 5	C	409	412	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	283	first strand
Strand 2	C	296	302	parallel
Strand 3	C	308	315	anti-parallel
Strand 4	C	334	340	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	493	first strand
Strand 2	C	535	538	parallel
Strand 3	C	552	558	parallel
Strand 4	C	561	566	anti-parallel
Strand 5	C	577	584	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	109	first strand
Strand 2	D	119	124	anti-parallel
Strand 3	D	160	165	anti-parallel
Strand 4	D	152	154	anti-parallel
Strand 5	D	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	132	first strand
Strand 2	D	448	450	anti-parallel
Strand 3	D	456	461	anti-parallel
Strand 4	D	418	422	anti-parallel
Strand 5	D	409	412	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	283	first strand
Strand 2	D	296	302	parallel
Strand 3	D	308	315	anti-parallel
Strand 4	D	334	340	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	493	first strand
Strand 2	D	535	538	parallel
Strand 3	D	552	558	parallel
Strand 4	D	561	566	anti-parallel
Strand 5	D	577	584	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	19	first strand
Strand 2	E	2	9	anti-parallel
Strand 3	E	85	88	parallel
Strand 4	E	48	53	anti-parallel
Strand 5	E	73	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	80	81	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	75	first strand
Strand 2	F	48	53	anti-parallel
Strand 3	F	86	88	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H8Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H8Y