Analysis of interatomic Contacts of Structural Units in PDB entry:
5H98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H98 entry

There are 2 chains in PDB entry 5H98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3PHE 237
B
 GLY 3PHE 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5H98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 17Right-handed alpha
Helix 2
AA2
A
29 34Right-handed alpha
Helix 3
AA3
A
34 46Right-handed alpha
Helix 4
AA4
A
61 66Right-handed alpha
Helix 5
AA5
A
73 80Right-handed alpha
Helix 6
AA6
A
106 123Right-handed alpha
Helix 7
AA7
A
124 130Right-handed alpha
Helix 8
AA8
A
151 155Right-handed 310
Helix 9
AA9
A
156 179Right-handed alpha
Helix 10
AB1
A
187 198Right-handed alpha
Helix 11
AB2
A
215 233Right-handed alpha
Helix 12
AB3
B
4 17Right-handed alpha
Helix 13
AB4
B
29 34Right-handed alpha
Helix 14
AB5
B
34 46Right-handed alpha
Helix 15
AB6
B
73 79Right-handed alpha
Helix 16
AB7
B
108 123Right-handed alpha
Helix 17
AB8
B
124 130Right-handed alpha
Helix 18
AB9
B
151 155Right-handed 310
Helix 19
AC1
B
156 179Right-handed alpha
Helix 20
AC2
B
187 198Right-handed alpha
Helix 21
AC3
B
222 233Right-handed alpha
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There are 4 sheets in PDB entry 5H98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
141 143anti-parallel
Strand 3
A
149 150anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
52 56parallel
Strand 3
A
182 186parallel
Strand 4
A
204 208parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
141 143anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
52 56parallel
Strand 3
B
182 186parallel
Strand 4
B
204 208parallel
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