Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H9D entry

There are 6 chains in PDB entry 5H9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2THR 319
B
 ALA 2THR 319
C
 THR 3ASN 190
D
 THR 3ASN 190
K
 LYS 174ASN 190
L
 LYS 174ASN 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5H9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 21Right-handed alpha
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
42 52Right-handed alpha
Helix 4
AA4
A
61 86Right-handed alpha
Helix 5
AA5
A
96 101Right-handed alpha
Helix 6
AA6
A
102 122Right-handed alpha
Helix 7
AA7
A
126 151Right-handed alpha
Helix 8
AA8
A
157 169Right-handed alpha
Helix 9
AA9
A
169 184Right-handed alpha
Helix 10
AB1
A
187 216Right-handed alpha
Helix 11
AB2
A
217 222Right-handed alpha
Helix 12
AB3
A
226 231Right-handed alpha
Helix 13
AB4
A
235 244Right-handed alpha
Helix 14
AB5
A
245 254Right-handed alpha
Helix 15
AB6
A
260 273Right-handed alpha
Helix 16
AB7
A
275 297Right-handed alpha
Helix 17
AB8
A
301 316Right-handed alpha
Helix 18
AB9
B
5 21Right-handed alpha
Helix 19
AC1
B
25 39Right-handed alpha
Helix 20
AC2
B
42 52Right-handed alpha
Helix 21
AC3
B
61 86Right-handed alpha
Helix 22
AC4
B
96 101Right-handed alpha
Helix 23
AC5
B
102 122Right-handed alpha
Helix 24
AC6
B
126 151Right-handed alpha
Helix 25
AC7
B
157 169Right-handed alpha
Helix 26
AC8
B
169 184Right-handed alpha
Helix 27
AC9
B
187 216Right-handed alpha
Helix 28
AD1
B
217 222Right-handed alpha
Helix 29
AD2
B
226 231Right-handed alpha
Helix 30
AD3
B
235 244Right-handed alpha
Helix 31
AD4
B
245 254Right-handed alpha
Helix 32
AD5
B
260 273Right-handed alpha
Helix 33
AD6
B
275 297Right-handed alpha
Helix 34
AD7
B
301 316Right-handed alpha
Helix 35
AD8
C
4 16Right-handed alpha
Helix 36
AD9
C
28 33Right-handed alpha
Helix 37
AE1
C
42 64Right-handed alpha
Helix 38
AE2
C
69 89Right-handed alpha
Helix 39
AE3
C
90 113Right-handed alpha
Helix 40
AE4
C
117 141Right-handed alpha
Helix 41
AE5
C
149 154Right-handed alpha
Helix 42
AE6
C
160 164Right-handed 310
Helix 43
AE7
C
173 181Right-handed alpha
Helix 44
AE8
D
4 16Right-handed alpha
Helix 45
AE9
D
28 33Right-handed alpha
Helix 46
AF1
D
42 64Right-handed alpha
Helix 47
AF2
D
68 89Right-handed alpha
Helix 48
AF3
D
90 113Right-handed alpha
Helix 49
AF4
D
117 141Right-handed alpha
Helix 50
AF5
D
149 154Right-handed alpha
Helix 51
AF6
D
160 164Right-handed 310
Helix 52
AF7
D
173 181Right-handed alpha
Helix 53
AF8
K
175 187Right-handed alpha
Helix 54
AF9
L
175 187Right-handed alpha
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There are 2 sheets in PDB entry 5H9D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
94 95anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
94 95anti-parallel
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