Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H9M entry

There are 2 chains in PDB entry 5H9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 132THR 321
B
 ALA 133THR 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5H9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 144Right-handed 310
Helix 2
AA2
A
153 161Right-handed alpha
Helix 3
AA3
A
180 182Right-handed 310
Helix 4
AA4
A
183 192Right-handed alpha
Helix 5
AA5
A
254 259Right-handed alpha
Helix 6
AA6
A
284 286Right-handed 310
Helix 7
AA7
A
287 293Right-handed alpha
Helix 8
AA8
A
301 308Right-handed alpha
Helix 9
AA9
B
140 144Right-handed 310
Helix 10
AB1
B
153 161Right-handed alpha
Helix 11
AB2
B
180 182Right-handed 310
Helix 12
AB3
B
183 192Right-handed alpha
Helix 13
AB4
B
254 259Right-handed alpha
Helix 14
AB5
B
286 293Right-handed alpha
Helix 15
AB6
B
301 308Right-handed alpha
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There are 9 sheets in PDB entry 5H9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
148 150anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
178 179anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
217 224parallel
Strand 3
A
227 239anti-parallel
Strand 4
A
242 251anti-parallel
Strand 5
A
281 282parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
217 224parallel
Strand 3
A
227 239anti-parallel
Strand 4
A
242 251anti-parallel
Strand 5
A
297 300anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
313 320anti-parallel
Strand 3
A
262 269anti-parallel
Strand 4
A
272 278anti-parallel
Strand 5
B
272 278anti-parallel
Strand 6
B
262 269anti-parallel
Strand 7
B
313 320anti-parallel
Strand 8
B
202 207anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 137first strand
Strand 2
B
148 149anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
178 179anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
216 224parallel
Strand 3
B
227 239anti-parallel
Strand 4
B
242 251anti-parallel
Strand 5
B
281 282parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
216 224parallel
Strand 3
B
227 239anti-parallel
Strand 4
B
242 251anti-parallel
Strand 5
B
297 300anti-parallel
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