Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5H9U entry

There are 4 chains in PDB entry 5H9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	GLY 394
A	MET 1	GLY 394
B	MET 1	GLY 394
D	MET 1	LYS 118

There are 68 helices in PDB entry 5H9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	16	36	Right-handed alpha
Helix 2	AA2	C	65	78	Right-handed alpha
Helix 3	AA3	C	81	85	Right-handed 310
Helix 4	AA4	C	111	116	Right-handed alpha
Helix 5	AA5	C	121	125	Right-handed 310
Helix 6	AA6	C	147	166	Right-handed alpha
Helix 7	AA7	C	206	218	Right-handed alpha
Helix 8	AA8	C	218	223	Right-handed alpha
Helix 9	AA9	C	224	228	Right-handed 310
Helix 10	AB1	C	246	250	Right-handed 310
Helix 11	AB2	C	258	263	Right-handed alpha
Helix 12	AB3	C	282	301	Right-handed alpha
Helix 13	AB4	C	334	346	Right-handed alpha
Helix 14	AB5	C	349	358	Right-handed alpha
Helix 15	AB6	C	364	369	Right-handed 310
Helix 16	AB7	C	378	382	Right-handed 310
Helix 17	AB8	C	385	394	Right-handed alpha
Helix 18	AB9	A	16	36	Right-handed alpha
Helix 19	AC1	A	65	78	Right-handed alpha
Helix 20	AC2	A	81	85	Right-handed 310
Helix 21	AC3	A	111	116	Right-handed alpha
Helix 22	AC4	A	121	125	Right-handed 310
Helix 23	AC5	A	147	166	Right-handed alpha
Helix 24	AC6	A	206	218	Right-handed alpha
Helix 25	AC7	A	218	223	Right-handed alpha
Helix 26	AC8	A	224	228	Right-handed 310
Helix 27	AC9	A	246	250	Right-handed 310
Helix 28	AD1	A	258	263	Right-handed alpha
Helix 29	AD2	A	282	301	Right-handed alpha
Helix 30	AD3	A	334	346	Right-handed alpha
Helix 31	AD4	A	349	358	Right-handed alpha
Helix 32	AD5	A	364	369	Right-handed 310
Helix 33	AD6	A	378	382	Right-handed 310
Helix 34	AD7	A	385	394	Right-handed alpha
Helix 35	AD8	B	16	36	Right-handed alpha
Helix 36	AD9	B	65	77	Right-handed alpha
Helix 37	AE1	B	81	85	Right-handed 310
Helix 38	AE2	B	111	116	Right-handed alpha
Helix 39	AE3	B	121	125	Right-handed 310
Helix 40	AE4	B	147	166	Right-handed alpha
Helix 41	AE5	B	206	218	Right-handed alpha
Helix 42	AE6	B	218	223	Right-handed alpha
Helix 43	AE7	B	224	228	Right-handed 310
Helix 44	AE8	B	246	250	Right-handed 310
Helix 45	AE9	B	258	263	Right-handed alpha
Helix 46	AF1	B	282	301	Right-handed alpha
Helix 47	AF2	B	334	346	Right-handed alpha
Helix 48	AF3	B	349	358	Right-handed alpha
Helix 49	AF4	B	364	369	Right-handed 310
Helix 50	AF5	B	378	382	Right-handed 310
Helix 51	AF6	B	385	394	Right-handed alpha
Helix 52	AF7	D	16	36	Right-handed alpha
Helix 53	AF8	D	65	78	Right-handed alpha
Helix 54	AF9	D	82	85	Right-handed 310
Helix 55	AG1	D	111	116	Right-handed alpha
Helix 56	AG2	D	121	125	Right-handed 310
Helix 57	AG3	D	147	167	Right-handed alpha
Helix 58	AG4	D	206	218	Right-handed alpha
Helix 59	AG5	D	218	223	Right-handed alpha
Helix 60	AG6	D	224	228	Right-handed 310
Helix 61	AG7	D	246	250	Right-handed 310
Helix 62	AG8	D	258	263	Right-handed alpha
Helix 63	AG9	D	282	301	Right-handed alpha
Helix 64	AH1	D	334	346	Right-handed alpha
Helix 65	AH2	D	349	358	Right-handed alpha
Helix 66	AH3	D	364	369	Right-handed 310
Helix 67	AH4	D	378	382	Right-handed 310
Helix 68	AH5	D	385	394	Right-handed alpha

There are 13 sheets in PDB entry 5H9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	12	first strand
Strand 2	C	172	185	anti-parallel
Strand 3	C	188	201	anti-parallel
Strand 4	C	234	237	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	100	first strand
Strand 2	C	51	59	parallel
Strand 3	C	40	48	anti-parallel
Strand 4	C	253	254	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	139	first strand
Strand 2	C	306	313	anti-parallel
Strand 3	C	322	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	172	185	anti-parallel
Strand 3	A	188	201	anti-parallel
Strand 4	A	234	237	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	100	first strand
Strand 2	A	51	59	parallel
Strand 3	A	40	48	anti-parallel
Strand 4	A	253	254	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	139	first strand
Strand 2	A	306	313	anti-parallel
Strand 3	A	322	326	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	12	first strand
Strand 2	B	172	185	anti-parallel
Strand 3	B	188	201	anti-parallel
Strand 4	B	234	237	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	100	first strand
Strand 2	B	51	59	parallel
Strand 3	B	40	48	anti-parallel
Strand 4	B	253	254	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	139	first strand
Strand 2	B	306	313	anti-parallel
Strand 3	B	322	326	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	12	first strand
Strand 2	D	172	185	anti-parallel
Strand 3	D	188	201	anti-parallel
Strand 4	D	234	237	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	100	first strand
Strand 2	D	51	59	parallel
Strand 3	D	40	48	anti-parallel
Strand 4	D	253	254	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	86	87	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	139	first strand
Strand 2	D	306	313	anti-parallel
Strand 3	D	322	326	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5H9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9U