Analysis of interatomic Contacts of Structural Units in PDB entry:
5H9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5H9Y entry

There is 1 chain in PDB entry 5H9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1TRP 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5H9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 101Right-handed 310
Helix 2
AA2
A
102 106Right-handed 310
Helix 3
AA3
A
159 163Right-handed 310
Helix 4
AA4
A
183 185Right-handed 310
Helix 5
AA5
A
280 292Right-handed alpha
Helix 6
AA6
A
293 301Right-handed 310
Helix 7
AA7
A
311 314Right-handed 310
Helix 8
AA8
A
333 340Right-handed alpha
Helix 9
AA9
A
341 345Right-handed 310
Helix 10
AB1
A
346 355Right-handed alpha
Helix 11
AB2
A
360 364Right-handed 310
Helix 12
AB3
A
366 370Right-handed 310
Helix 13
AB4
A
377 386Right-handed alpha
Helix 14
AB5
A
387 391Right-handed 310
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There are 9 sheets in PDB entry 5H9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 10first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
51 56anti-parallel
Strand 4
A
44 46anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
76 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
82 84anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
114 121anti-parallel
Strand 3
A
412 420parallel
Strand 4
A
258 264anti-parallel
Strand 5
A
270 274anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
180 181anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
131 138anti-parallel
Strand 4
A
193 202anti-parallel
Strand 5
A
231 240anti-parallel
Strand 6
A
243 248anti-parallel
Strand 7
A
406 409anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
173 175anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
214 216anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
308 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il