Analysis of interatomic Contacts of Structural Units in PDB entry:
5HA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HA9 entry

There are 2 chains in PDB entry 5HA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0THR 350
B
 MET 0THR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5HA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
41 61Right-handed alpha
Helix 4
AA4
A
64 79Right-handed alpha
Helix 5
AA5
A
93 119Right-handed alpha
Helix 6
AA6
A
127 136Right-handed alpha
Helix 7
AA7
A
147 160Right-handed alpha
Helix 8
AA8
A
182 187Right-handed alpha
Helix 9
AA9
A
188 191Right-handed 310
Helix 10
AB1
A
204 206Right-handed 310
Helix 11
AB2
A
207 214Right-handed alpha
Helix 12
AB3
A
224 228Right-handed 310
Helix 13
AB4
A
239 246Right-handed alpha
Helix 14
AB5
A
332 334Right-handed 310
Helix 15
AB6
B
5 17Right-handed alpha
Helix 16
AB7
B
17 28Right-handed alpha
Helix 17
AB8
B
41 61Right-handed alpha
Helix 18
AB9
B
64 79Right-handed alpha
Helix 19
AC1
B
93 119Right-handed alpha
Helix 20
AC2
B
127 136Right-handed alpha
Helix 21
AC3
B
147 160Right-handed alpha
Helix 22
AC4
B
182 188Right-handed alpha
Helix 23
AC5
B
204 206Right-handed 310
Helix 24
AC6
B
207 215Right-handed alpha
Helix 25
AC7
B
224 228Right-handed 310
Helix 26
AC8
B
239 245Right-handed alpha
Helix 27
AC9
B
246 248Right-handed 310
Helix 28
AD1
B
332 334Right-handed 310
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There are 9 sheets in PDB entry 5HA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 142first strand
Strand 2
A
172 180anti-parallel
Strand 3
A
336 345anti-parallel
Strand 4
A
255 264anti-parallel
Strand 5
A
196 203anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
347 348anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
327 330anti-parallel
Strand 3
A
286 289anti-parallel
Strand 4
A
268 271parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
313 315anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
306 307anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
168 177anti-parallel
Strand 3
B
336 348anti-parallel
Strand 4
B
255 264anti-parallel
Strand 5
B
196 201anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 235first strand
Strand 2
B
327 330anti-parallel
Strand 3
B
286 289anti-parallel
Strand 4
B
268 271parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
323 325parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
306 309anti-parallel
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