Analysis of interatomic Contacts of Structural Units in PDB entry:
5HAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HAA entry

There are 2 chains in PDB entry 5HAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLU 447
B
 HIS -13ASP 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5HAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 60Right-handed alpha
Helix 2
AA2
A
64 70Right-handed 310
Helix 3
AA3
A
84 89Right-handed alpha
Helix 4
AA4
A
90 95Right-handed alpha
Helix 5
AA5
A
96 98Right-handed 310
Helix 6
AA6
A
105 117Right-handed alpha
Helix 7
AA7
A
188 199Right-handed alpha
Helix 8
AA8
A
218 232Right-handed alpha
Helix 9
AA9
A
249 262Right-handed alpha
Helix 10
AB1
A
270 283Right-handed alpha
Helix 11
AB2
A
297 312Right-handed alpha
Helix 12
AB3
A
329 336Right-handed alpha
Helix 13
AB4
A
358 375Right-handed alpha
Helix 14
AB5
A
390 402Right-handed alpha
Helix 15
AB6
A
412 426Right-handed alpha
Helix 16
AB7
B
52 60Right-handed alpha
Helix 17
AB8
B
64 70Right-handed 310
Helix 18
AB9
B
84 89Right-handed alpha
Helix 19
AC1
B
90 95Right-handed alpha
Helix 20
AC2
B
96 98Right-handed 310
Helix 21
AC3
B
105 120Right-handed alpha
Helix 22
AC4
B
188 199Right-handed alpha
Helix 23
AC5
B
218 232Right-handed alpha
Helix 24
AC6
B
248 263Right-handed alpha
Helix 25
AC7
B
270 283Right-handed alpha
Helix 26
AC8
B
297 312Right-handed alpha
Helix 27
AC9
B
329 336Right-handed alpha
Helix 28
AD1
B
358 375Right-handed alpha
Helix 29
AD2
B
390 402Right-handed alpha
Helix 30
AD3
B
412 426Right-handed alpha
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There are 6 sheets in PDB entry 5HAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
102 104parallel
Strand 3
A
74 79parallel
Strand 4
A
27 31parallel
Strand 5
A
19 24anti-parallel
Strand 6
A
4 10anti-parallel
Strand 7
A
442 445anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
144 150anti-parallel
Strand 3
A
157 164anti-parallel
Strand 4
A
167 172anti-parallel
Strand 5
A
200 206parallel
Strand 6
A
405 409parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
265 269parallel
Strand 3
A
316 320parallel
Strand 4
A
240 244parallel
Strand 5
A
348 352parallel
Strand 6
A
378 380parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
102 104parallel
Strand 3
B
74 79parallel
Strand 4
B
27 31parallel
Strand 5
B
19 24anti-parallel
Strand 6
B
2 10anti-parallel
Strand 7
B
441 447anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 140first strand
Strand 2
B
143 150anti-parallel
Strand 3
B
157 164anti-parallel
Strand 4
B
167 172anti-parallel
Strand 5
B
200 206parallel
Strand 6
B
405 409parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 295first strand
Strand 2
B
265 269parallel
Strand 3
B
316 320parallel
Strand 4
B
240 244parallel
Strand 5
B
348 352parallel
Strand 6
B
378 380parallel
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