Analysis of interatomic Contacts of Structural Units in PDB entry:
5HAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HAF entry

There are 2 chains in PDB entry 5HAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 15GLN 340
B
 HIS 8GLN 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5HAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 21Right-handed 310
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
40 52Right-handed alpha
Helix 4
AA4
A
55 70Right-handed alpha
Helix 5
AA5
A
76 95Right-handed alpha
Helix 6
AA6
A
96 102Right-handed alpha
Helix 7
AA7
A
105 109Right-handed 310
Helix 8
AA8
A
112 119Right-handed alpha
Helix 9
AA9
A
124 127Right-handed 310
Helix 10
AB1
A
128 136Right-handed alpha
Helix 11
AB2
A
161 172Right-handed alpha
Helix 12
AB3
A
195 208Right-handed alpha
Helix 13
AB4
A
248 260Right-handed alpha
Helix 14
AB5
A
261 263Right-handed 310
Helix 15
AB6
A
266 268Right-handed 310
Helix 16
AB7
A
284 299Right-handed alpha
Helix 17
AB8
A
303 317Right-handed alpha
Helix 18
AB9
A
319 336Right-handed alpha
Helix 19
AC1
A
337 339Right-handed 310
Helix 20
AC2
B
25 38Right-handed alpha
Helix 21
AC3
B
40 52Right-handed alpha
Helix 22
AC4
B
55 70Right-handed alpha
Helix 23
AC5
B
78 95Right-handed alpha
Helix 24
AC6
B
105 110Right-handed 310
Helix 25
AC7
B
112 122Right-handed alpha
Helix 26
AC8
B
124 137Right-handed alpha
Helix 27
AC9
B
161 173Right-handed alpha
Helix 28
AD1
B
195 208Right-handed alpha
Helix 29
AD2
B
248 263Right-handed alpha
Helix 30
AD3
B
284 298Right-handed alpha
Helix 31
AD4
B
303 317Right-handed alpha
Helix 32
AD5
B
319 337Right-handed alpha
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There are 4 sheets in PDB entry 5HAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
213 219parallel
Strand 3
A
185 186parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
213 219parallel
Strand 3
A
224 231anti-parallel
Strand 4
A
236 242anti-parallel
Strand 5
A
270 274parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
213 219parallel
Strand 3
B
185 186parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
213 219parallel
Strand 3
B
224 232anti-parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
271 274parallel
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