Analysis of interatomic Contacts of Structural Units in PDB entry:
5HAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HAM entry

There are 2 chains in PDB entry 5HAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 423GLN 682
B
 ASP 423GLN 682
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5HAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
427 438Right-handed alpha
Helix 2
AA2
A
458 467Right-handed alpha
Helix 3
AA3
A
468 487Right-handed alpha
Helix 4
AA4
A
491 511Right-handed alpha
Helix 5
AA5
A
512 548Right-handed alpha
Helix 6
AA6
A
591 606Right-handed alpha
Helix 7
AA7
A
624 626Right-handed 310
Helix 8
AA8
A
627 641Right-handed alpha
Helix 9
AA9
A
647 652Right-handed alpha
Helix 10
AB1
A
654 669Right-handed alpha
Helix 11
AB2
A
671 680Right-handed alpha
Helix 12
AB3
B
427 439Right-handed alpha
Helix 13
AB4
B
458 467Right-handed alpha
Helix 14
AB5
B
469 487Right-handed alpha
Helix 15
AB6
B
491 509Right-handed alpha
Helix 16
AB7
B
512 547Right-handed alpha
Helix 17
AB8
B
591 606Right-handed alpha
Helix 18
AB9
B
624 626Right-handed 310
Helix 19
AC1
B
627 641Right-handed alpha
Helix 20
AC2
B
654 669Right-handed alpha
Helix 21
AC3
B
671 679Right-handed alpha
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There are 4 sheets in PDB entry 5HAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
552 558parallel
Strand 3
A
450 451parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
552 558parallel
Strand 3
A
564 572anti-parallel
Strand 4
A
577 583anti-parallel
Strand 5
A
613 616parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 446first strand
Strand 2
B
552 558parallel
Strand 3
B
450 451parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 446first strand
Strand 2
B
552 558parallel
Strand 3
B
564 572anti-parallel
Strand 4
B
577 583anti-parallel
Strand 5
B
613 616parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il