Analysis of interatomic Contacts of Structural Units in PDB entry:
5HAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HAX entry

There are 2 chains in PDB entry 5HAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 74ARG 825
B
 ARG 342PRO 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5HAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 93Right-handed alpha
Helix 2
AA2
A
97 102Right-handed alpha
Helix 3
AA3
A
131 140Right-handed alpha
Helix 4
AA4
A
322 324Right-handed 310
Helix 5
AA5
A
354 365Right-handed alpha
Helix 6
AA6
A
495 502Right-handed alpha
Helix 7
AA7
A
504 508Right-handed 310
Helix 8
AA8
A
540 545Right-handed alpha
Helix 9
AA9
A
547 551Right-handed 310
Helix 10
AB1
A
574 587Right-handed alpha
Helix 11
AB2
A
590 606Right-handed alpha
Helix 12
AB3
A
606 619Right-handed alpha
Helix 13
AB4
A
634 648Right-handed alpha
Helix 14
AB5
A
670 685Right-handed alpha
Helix 15
AB6
A
706 726Right-handed alpha
Helix 16
AB7
A
748 780Right-handed alpha
Helix 17
AB8
A
781 788Right-handed alpha
Helix 18
AB9
A
790 799Right-handed alpha
Helix 19
AC1
A
801 808Right-handed alpha
Helix 20
AC2
A
808 825Right-handed alpha
Helix 21
AC3
B
348 353Right-handed alpha
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There are 9 sheets in PDB entry 5HAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 107first strand
Strand 2
A
426 433parallel
Strand 3
A
403 409anti-parallel
Strand 4
A
392 398anti-parallel
Strand 5
A
378 383anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
512 518parallel
Strand 3
A
488 494anti-parallel
Strand 4
A
475 480anti-parallel
Strand 5
A
465 471anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
566 572anti-parallel
Strand 3
A
558 563anti-parallel
Strand 4
A
525 530anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 150first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
163 168anti-parallel
Strand 4
A
177 179anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
240 242anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 192first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
214 223anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
B
346 347parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
259 262anti-parallel
Strand 3
A
270 274anti-parallel
Strand 4
A
285 289anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 321first strand
Strand 2
A
326 331anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
348 353anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 694first strand
Strand 2
A
702 703anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il