Analysis of interatomic Contacts of Structural Units in PDB entry:
5HB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HB8 entry

There are 4 chains in PDB entry 5HB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 130ASP 253
B
 PRO 130ASP 253
C
 PRO 130ASP 253
D
 HIS 131ASP 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5HB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 145Right-handed 310
Helix 2
AA2
A
146 159Right-handed alpha
Helix 3
AA3
A
192 201Right-handed alpha
Helix 4
AA4
A
215 225Right-handed alpha
Helix 5
AA5
B
143 145Right-handed 310
Helix 6
AA6
B
146 159Right-handed alpha
Helix 7
AA7
B
192 200Right-handed alpha
Helix 8
AA8
B
215 225Right-handed alpha
Helix 9
AA9
C
143 145Right-handed 310
Helix 10
AB1
C
146 159Right-handed alpha
Helix 11
AB2
C
192 201Right-handed alpha
Helix 12
AB3
C
215 225Right-handed alpha
Helix 13
AB4
D
143 145Right-handed 310
Helix 14
AB5
D
146 159Right-handed alpha
Helix 15
AB6
D
192 200Right-handed alpha
Helix 16
AB7
D
215 225Right-handed alpha
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There are 4 sheets in PDB entry 5HB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 213first strand
Strand 2
A
134 139anti-parallel
Strand 3
A
233 239anti-parallel
Strand 4
A
228 230anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 213first strand
Strand 2
B
134 139anti-parallel
Strand 3
B
233 239anti-parallel
Strand 4
B
228 230anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 213first strand
Strand 2
C
134 139anti-parallel
Strand 3
C
233 239anti-parallel
Strand 4
C
228 230anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
208 213first strand
Strand 2
D
134 139anti-parallel
Strand 3
D
233 239anti-parallel
Strand 4
D
228 230anti-parallel
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