Analysis of interatomic Contacts of Structural Units in PDB entry:
5HBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HBF entry

There are 2 chains in PDB entry 5HBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22LEU 473
B
 ALA 22HIS 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 5HBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
42 46Right-handed 310
Helix 4
AA4
A
72 82Right-handed alpha
Helix 5
AA5
A
83 86Right-handed 310
Helix 6
AA6
A
103 112Right-handed alpha
Helix 7
AA7
A
112 130Right-handed alpha
Helix 8
AA8
A
150 174Right-handed alpha
Helix 9
AA9
A
187 195Right-handed alpha
Helix 10
AB1
A
196 204Right-handed alpha
Helix 11
AB2
A
235 241Right-handed 310
Helix 12
AB3
A
242 253Right-handed alpha
Helix 13
AB4
A
256 258Right-handed 310
Helix 14
AB5
A
303 307Right-handed alpha
Helix 15
AB6
A
336 350Right-handed alpha
Helix 16
AB7
A
359 363Right-handed 310
Helix 17
AB8
A
375 386Right-handed alpha
Helix 18
AB9
B
31 35Right-handed 310
Helix 19
AC1
B
36 40Right-handed 310
Helix 20
AC2
B
42 46Right-handed 310
Helix 21
AC3
B
72 82Right-handed alpha
Helix 22
AC4
B
83 86Right-handed 310
Helix 23
AC5
B
103 112Right-handed alpha
Helix 24
AC6
B
112 131Right-handed alpha
Helix 25
AC7
B
150 173Right-handed alpha
Helix 26
AC8
B
187 195Right-handed alpha
Helix 27
AC9
B
196 204Right-handed alpha
Helix 28
AD1
B
235 241Right-handed 310
Helix 29
AD2
B
242 253Right-handed alpha
Helix 30
AD3
B
256 258Right-handed 310
Helix 31
AD4
B
303 307Right-handed alpha
Helix 32
AD5
B
336 350Right-handed alpha
Helix 33
AD6
B
359 363Right-handed 310
Helix 34
AD7
B
375 386Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 5HBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
91 97parallel
Strand 4
A
134 138parallel
Strand 5
A
179 185parallel
Strand 6
A
206 210parallel
Strand 7
A
260 265parallel
Strand 8
A
354 358parallel
Strand 9
A
23 29parallel
Strand 10
A
53 62parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
300 302anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
330 333anti-parallel
Strand 4
A
322 327anti-parallel
Strand 5
A
313 317anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 430first strand
Strand 2
A
433 441anti-parallel
Strand 3
A
444 449anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 457first strand
Strand 2
A
462 464anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
91 97parallel
Strand 4
B
134 138parallel
Strand 5
B
179 185parallel
Strand 6
B
206 210parallel
Strand 7
B
260 265parallel
Strand 8
B
354 358parallel
Strand 9
B
23 29parallel
Strand 10
B
53 62parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
300 302anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
267 273anti-parallel
Strand 3
B
330 333anti-parallel
Strand 4
B
322 327anti-parallel
Strand 5
B
313 317anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
426 429first strand
Strand 2
B
436 440anti-parallel
Strand 3
B
445 449anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 457first strand
Strand 2
B
462 464anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il