Analysis of interatomic Contacts of Structural Units in PDB entry:
5HBV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5HBV entry

There are 4 chains in PDB entry 5HBV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	GLY 74
B	LYS 0	PRO 211
C	ASP 1	ASN 211
D	GLU 1	CYS 219

There are 11 helices in PDB entry 5HBV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	37	Right-handed alpha
Helix 2	AA2	B	1	13	Right-handed alpha
Helix 3	AA3	B	68	73	Right-handed 310
Helix 4	AA4	B	83	85	Right-handed 310
Helix 5	AA5	C	79	83	Right-handed 310
Helix 6	AA6	C	120	126	Right-handed alpha
Helix 7	AA7	C	181	187	Right-handed alpha
Helix 8	AA8	D	61	64	Right-handed 310
Helix 9	AA9	D	86	89	Right-handed 310
Helix 10	AB1	D	166	168	Right-handed 310
Helix 11	AB2	D	193	198	Right-handed alpha

There are 14 sheets in PDB entry 5HBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	12	15	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	22	28	anti-parallel
Strand 3	A	39	45	anti-parallel
Strand 4	B	176	190	anti-parallel
Strand 5	B	193	209	anti-parallel
Strand 6	B	139	148	anti-parallel
Strand 7	B	121	130	anti-parallel
Strand 8	B	49	66	anti-parallel
Strand 9	B	90	93	first strand

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	81	first strand
Strand 2	B	107	111	anti-parallel
Strand 3	B	113	118	anti-parallel
Strand 4	B	49	66	anti-parallel
Strand 5	B	121	130	anti-parallel
Strand 6	B	139	148	anti-parallel
Strand 7	B	29	44	first strand
Strand 8	B	156	160	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	67	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	101	105	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	49	anti-parallel
Strand 6	C	53	54	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	101	105	parallel
Strand 3	C	85	90	anti-parallel
Strand 4	C	96	97	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	117	first strand
Strand 2	C	129	138	anti-parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	158	162	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	143	149	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	204	208	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	118	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	33	40	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	115	118	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	104	110	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	143	152	anti-parallel
Strand 3	D	182	190	anti-parallel
Strand 4	D	170	172	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	131	first strand
Strand 2	D	143	152	anti-parallel
Strand 3	D	182	190	anti-parallel
Strand 4	D	176	177	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	201	206	anti-parallel
Strand 3	D	211	216	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5HBV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5HBV