Analysis of interatomic Contacts of Structural Units in PDB entry:
5HC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HC5 entry

There are 4 chains in PDB entry 5HC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLY 344
B
 LYS 4GLY 344
C
 LYS 4GLY 344
D
 LYS 4GLY 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5HC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
32 42Right-handed alpha
Helix 3
AA3
A
42 59Right-handed alpha
Helix 4
AA4
A
117 129Right-handed alpha
Helix 5
AA5
A
155 171Right-handed alpha
Helix 6
AA6
A
171 176Right-handed alpha
Helix 7
AA7
A
188 204Right-handed alpha
Helix 8
AA8
A
205 210Right-handed 310
Helix 9
AA9
A
230 235Right-handed alpha
Helix 10
AB1
A
245 258Right-handed alpha
Helix 11
AB2
A
264 268Right-handed 310
Helix 12
AB3
A
269 274Right-handed alpha
Helix 13
AB4
A
289 304Right-handed alpha
Helix 14
AB5
A
318 322Right-handed 310
Helix 15
AB6
A
326 343Right-handed alpha
Helix 16
AB7
B
12 20Right-handed alpha
Helix 17
AB8
B
32 41Right-handed alpha
Helix 18
AB9
B
42 59Right-handed alpha
Helix 19
AC1
B
117 129Right-handed alpha
Helix 20
AC2
B
155 170Right-handed alpha
Helix 21
AC3
B
171 176Right-handed alpha
Helix 22
AC4
B
188 204Right-handed alpha
Helix 23
AC5
B
206 210Right-handed 310
Helix 24
AC6
B
230 235Right-handed alpha
Helix 25
AC7
B
245 258Right-handed alpha
Helix 26
AC8
B
264 268Right-handed 310
Helix 27
AC9
B
269 274Right-handed alpha
Helix 28
AD1
B
289 303Right-handed alpha
Helix 29
AD2
B
318 322Right-handed 310
Helix 30
AD3
B
326 343Right-handed alpha
Helix 31
AD4
C
12 20Right-handed alpha
Helix 32
AD5
C
32 41Right-handed alpha
Helix 33
AD6
C
42 58Right-handed alpha
Helix 34
AD7
C
117 129Right-handed alpha
Helix 35
AD8
C
155 171Right-handed alpha
Helix 36
AD9
C
171 176Right-handed alpha
Helix 37
AE1
C
188 204Right-handed alpha
Helix 38
AE2
C
206 210Right-handed 310
Helix 39
AE3
C
229 235Right-handed alpha
Helix 40
AE4
C
245 258Right-handed alpha
Helix 41
AE5
C
264 268Right-handed 310
Helix 42
AE6
C
269 274Right-handed alpha
Helix 43
AE7
C
289 303Right-handed alpha
Helix 44
AE8
C
318 322Right-handed 310
Helix 45
AE9
C
326 343Right-handed alpha
Helix 46
AF1
D
12 20Right-handed alpha
Helix 47
AF2
D
32 41Right-handed alpha
Helix 48
AF3
D
42 58Right-handed alpha
Helix 49
AF4
D
117 129Right-handed alpha
Helix 50
AF5
D
155 171Right-handed alpha
Helix 51
AF6
D
188 204Right-handed alpha
Helix 52
AF7
D
206 210Right-handed 310
Helix 53
AF8
D
230 235Right-handed alpha
Helix 54
AF9
D
245 252Right-handed alpha
Helix 55
AG1
D
252 258Right-handed alpha
Helix 56
AG2
D
264 268Right-handed 310
Helix 57
AG3
D
269 274Right-handed alpha
Helix 58
AG4
D
289 303Right-handed alpha
Helix 59
AG5
D
318 322Right-handed 310
Helix 60
AG6
D
326 343Right-handed alpha
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There are 2 sheets in PDB entry 5HC5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 78first strand
Strand 2
A
85 93anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
99 105parallel
Strand 5
A
177 187parallel
Strand 6
A
212 216parallel
Strand 7
A
279 284parallel
Strand 8
A
307 312parallel
Strand 9
B
307 312anti-parallel
Strand 10
B
279 284parallel
Strand 11
B
212 216parallel
Strand 12
B
177 187parallel
Strand 13
B
99 105parallel
Strand 14
B
133 138parallel
Strand 15
B
85 93anti-parallel
Strand 16
B
70 78anti-parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 78first strand
Strand 2
C
85 93anti-parallel
Strand 3
C
133 138anti-parallel
Strand 4
C
99 105parallel
Strand 5
C
177 187parallel
Strand 6
C
212 216parallel
Strand 7
C
279 284parallel
Strand 8
C
307 312parallel
Strand 9
D
307 312anti-parallel
Strand 10
D
279 284parallel
Strand 11
D
212 216parallel
Strand 12
D
177 187parallel
Strand 13
D
99 105parallel
Strand 14
D
133 138parallel
Strand 15
D
85 93anti-parallel
Strand 16
D
70 78anti-parallel
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