Analysis of interatomic Contacts of Structural Units in PDB entry:
5HC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HC9 entry

There are 4 chains in PDB entry 5HC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 425
B
 MET 1GLU 425
C
 G 1 A 76
D
 G 1 G 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5HC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
16 33Right-handed alpha
Helix 3
AA3
A
41 50Right-handed alpha
Helix 4
AA4
A
63 75Right-handed alpha
Helix 5
AA5
A
116 118Right-handed 310
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
131 135Right-handed 310
Helix 8
AA8
A
153 160Right-handed alpha
Helix 9
AA9
A
169 174Right-handed alpha
Helix 10
AB1
A
176 188Right-handed alpha
Helix 11
AB2
A
193 206Right-handed alpha
Helix 12
AB3
A
207 212Right-handed alpha
Helix 13
AB4
A
213 226Right-handed alpha
Helix 14
AB5
A
229 240Right-handed alpha
Helix 15
AB6
A
241 247Right-handed alpha
Helix 16
AB7
A
253 274Right-handed alpha
Helix 17
AB8
A
278 288Right-handed alpha
Helix 18
AB9
A
292 303Right-handed alpha
Helix 19
AC1
A
308 329Right-handed alpha
Helix 20
AC2
A
332 341Right-handed alpha
Helix 21
AC3
A
344 353Right-handed alpha
Helix 22
AC4
A
356 372Right-handed alpha
Helix 23
AC5
A
378 385Right-handed alpha
Helix 24
AC6
A
391 407Right-handed alpha
Helix 25
AC7
A
412 425Right-handed alpha
Helix 26
AC8
B
7 15Right-handed alpha
Helix 27
AC9
B
16 34Right-handed alpha
Helix 28
AD1
B
41 50Right-handed alpha
Helix 29
AD2
B
63 75Right-handed alpha
Helix 30
AD3
B
122 128Right-handed alpha
Helix 31
AD4
B
131 135Right-handed 310
Helix 32
AD5
B
153 160Right-handed alpha
Helix 33
AD6
B
169 174Right-handed alpha
Helix 34
AD7
B
176 188Right-handed alpha
Helix 35
AD8
B
193 206Right-handed alpha
Helix 36
AD9
B
207 212Right-handed alpha
Helix 37
AE1
B
213 226Right-handed alpha
Helix 38
AE2
B
229 240Right-handed alpha
Helix 39
AE3
B
241 247Right-handed alpha
Helix 40
AE4
B
253 275Right-handed alpha
Helix 41
AE5
B
278 288Right-handed alpha
Helix 42
AE6
B
292 303Right-handed alpha
Helix 43
AE7
B
308 329Right-handed alpha
Helix 44
AE8
B
332 341Right-handed alpha
Helix 45
AE9
B
344 353Right-handed alpha
Helix 46
AF1
B
356 372Right-handed alpha
Helix 47
AF2
B
378 385Right-handed alpha
Helix 48
AF3
B
391 407Right-handed alpha
Helix 49
AF4
B
412 424Right-handed alpha
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There are 4 sheets in PDB entry 5HC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
147 149anti-parallel
Strand 3
A
137 139anti-parallel
Strand 4
A
37 40anti-parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
97 102parallel
Strand 7
A
87 92anti-parallel
Strand 8
A
77 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
191 192parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
147 149anti-parallel
Strand 3
B
137 139anti-parallel
Strand 4
B
37 40anti-parallel
Strand 5
B
56 60anti-parallel
Strand 6
B
97 102parallel
Strand 7
B
87 92anti-parallel
Strand 8
B
77 82anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
191 192parallel
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