Analysis of interatomic Contacts of Structural Units in PDB entry:
5HCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HCB entry

There are 2 chains in PDB entry 5HCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14GLU 359
B
 SER 14GLU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 5HCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 117Right-handed 310
Helix 2
AA2
A
190 194Right-handed alpha
Helix 3
AA3
A
330 356Right-handed alpha
Helix 4
AA4
B
107 111Right-handed 310
Helix 5
AA5
B
113 117Right-handed 310
Helix 6
AA6
B
190 194Right-handed alpha
Helix 7
AA7
B
200 205Right-handed alpha
Helix 8
AA8
B
330 359Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 5HCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
321 328anti-parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
42 45anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
321 328anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
A
163 171anti-parallel
Strand 5
A
175 180anti-parallel
Strand 6
A
183 189anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
65 77anti-parallel
Strand 3
A
306 315anti-parallel
Strand 4
A
98 100anti-parallel
Strand 5
A
125 132anti-parallel
Strand 6
A
135 144anti-parallel
Strand 7
A
147 149anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
65 77anti-parallel
Strand 3
A
306 315anti-parallel
Strand 4
A
103 106anti-parallel
Strand 5
A
125 132anti-parallel
Strand 6
A
135 144anti-parallel
Strand 7
A
147 149anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
321 328anti-parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
42 45anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
321 328anti-parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
163 171anti-parallel
Strand 5
B
175 180anti-parallel
Strand 6
B
183 189anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
65 77anti-parallel
Strand 3
B
306 315anti-parallel
Strand 4
B
98 100anti-parallel
Strand 5
B
125 132anti-parallel
Strand 6
B
135 144anti-parallel
Strand 7
B
147 149anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
65 77anti-parallel
Strand 3
B
306 315anti-parallel
Strand 4
B
103 106anti-parallel
Strand 5
B
125 132anti-parallel
Strand 6
B
135 144anti-parallel
Strand 7
B
147 149anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il