Analysis of interatomic Contacts of Structural Units in PDB entry:
5HCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5HCC entry

There are 2 chains in PDB entry 5HCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
GLU 20ARG 674
A
LEU 679TYR 1300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5HCC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
88 92Right-handed 310
Helix 2
AA2
B
302 308Right-handed alpha
Helix 3
AA3
B
492 496Right-handed 310
Helix 4
AA4
B
531 535Right-handed 310
Helix 5
AA5
B
608 611Right-handed 310
Helix 6
AA6
B
622 628Right-handed alpha
Helix 7
AA7
B
641 649Right-handed alpha
Helix 8
AA8
A
680 690Right-handed alpha
Helix 9
AA9
A
696 703Right-handed alpha
Helix 10
AB1
A
710 716Right-handed alpha
Helix 11
AB2
A
721 739Right-handed alpha
Helix 12
AB3
A
743 758Right-handed alpha
Helix 13
AB4
A
984 993Right-handed alpha
Helix 14
AB5
A
1007 1014Right-handed alpha
Helix 15
AB6
A
1015 1028Right-handed alpha
Helix 16
AB7
A
1030 1034Right-handed 310
Helix 17
AB8
A
1037 1055Right-handed alpha
Helix 18
AB9
A
1056 1060Right-handed 310
Helix 19
AC1
A
1075 1090Right-handed alpha
Helix 20
AC2
A
1096 1111Right-handed alpha
Helix 21
AC3
A
1132 1155Right-handed alpha
Helix 22
AC4
A
1156 1159Right-handed 310
Helix 23
AC5
A
1161 1179Right-handed alpha
Helix 24
AC6
A
1184 1197Right-handed alpha
Helix 25
AC7
A
1202 1215Right-handed alpha
Helix 26
AC8
A
1244 1261Right-handed alpha
Helix 27
AC9
A
1263 1278Right-handed alpha
Helix 28
AD1
A
1286 1304Right-handed alpha
Helix 29
AD2
A
1435 1444Right-handed alpha
Helix 30
AD3
A
1546 1551Right-handed alpha
Helix 31
AD4
A
1656 1673Right-handed alpha
Helix 32
AD5
C
31 36Right-handed alpha
Helix 33
AD6
C
37 40Right-handed 310
Helix 34
AD7
C
141 156Right-handed alpha
Helix 35
AD8
C
162 166Right-handed 310
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There are 29 sheets in PDB entry 5HCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
80 86first strand
Strand 2
B
36 44anti-parallel
Strand 3
B
22 28anti-parallel
Strand 4
B
651 655anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
31 32first strand
Strand 2
B
112 120parallel
Strand 3
B
101 108anti-parallel
Strand 4
B
50 58anti-parallel
Strand 5
B
65 73anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
125 130first strand
Strand 2
B
143 148anti-parallel
Strand 3
B
182 184anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
134 135first strand
Strand 2
B
212 219parallel
Strand 3
B
197 205anti-parallel
Strand 4
B
159 164anti-parallel
Strand 5
B
170 176anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
140 141first strand
Strand 2
B
188 189anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
221 222first strand
Strand 2
A
764 765parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
227 233first strand
Strand 2
B
246 254anti-parallel
Strand 3
B
258 259anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
227 233first strand
Strand 2
B
246 254anti-parallel
Strand 3
B
296 301anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
237 238first strand
Strand 2
B
337 347parallel
Strand 3
B
322 331anti-parallel
Strand 4
B
262 272anti-parallel
Strand 5
B
281 283anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
237 238first strand
Strand 2
B
337 347parallel
Strand 3
B
322 331anti-parallel
Strand 4
B
262 272anti-parallel
Strand 5
B
289 293anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
353 356first strand
Strand 2
B
369 376anti-parallel
Strand 3
B
417 422anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
362 363first strand
Strand 2
B
449 456parallel
Strand 3
B
428 437anti-parallel
Strand 4
B
387 396anti-parallel
Strand 5
B
401 403anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
362 363first strand
Strand 2
B
449 456parallel
Strand 3
B
428 437anti-parallel
Strand 4
B
387 396anti-parallel
Strand 5
B
407 410anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
464 468first strand
Strand 2
B
481 489anti-parallel
Strand 3
B
524 529anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
508 516first strand
Strand 2
B
498 505anti-parallel
Strand 3
B
537 546anti-parallel
Strand 4
B
553 562anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
571 576first strand
Strand 2
B
587 594anti-parallel
Strand 3
A
783 789anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
777 780first strand
Strand 2
B
598 606anti-parallel
Strand 3
A
795 805anti-parallel
Strand 4
A
808 811anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
777 780first strand
Strand 2
B
598 606anti-parallel
Strand 3
A
795 805anti-parallel
Strand 4
A
815 819anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
823 828first strand
Strand 2
A
838 847anti-parallel
Strand 3
A
892 902anti-parallel
Strand 4
A
865 867anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
823 828first strand
Strand 2
A
838 847anti-parallel
Strand 3
A
1485 1486anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
833 834first strand
Strand 2
A
919 930parallel
Strand 3
A
906 916anti-parallel
Strand 4
A
853 859anti-parallel
Strand 5
A
886 888anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
934 944first strand
Strand 2
A
1357 1367anti-parallel
Strand 3
A
974 980anti-parallel
Strand 4
A
1338 1339anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
956 959first strand
Strand 2
A
1346 1350anti-parallel
Strand 3
A
1310 1317anti-parallel
Strand 4
A
1324 1329anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1225 1227first strand
Strand 2
A
1217 1219anti-parallel
Strand 3
C
139 140anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1377 1384first strand
Strand 2
A
1401 1408anti-parallel
Strand 3
A
1473 1481anti-parallel
Strand 4
A
1432 1434anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1452 1456first strand
Strand 2
A
1459 1464anti-parallel
Strand 3
A
1422 1427anti-parallel
Strand 4
A
1491 1497anti-parallel
Strand 5
A
1500 1509anti-parallel
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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1625 1629first strand
Strand 2
A
1632 1638anti-parallel
Strand 3
A
1597 1603parallel
Strand 4
A
1574 1587anti-parallel
Strand 5
A
1559 1571anti-parallel
Strand 6
A
1616 1621anti-parallel
Strand 7
A
1644 1647anti-parallel
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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 48first strand
Strand 2
C
55 61anti-parallel
Strand 3
C
69 78anti-parallel
Strand 4
C
81 92anti-parallel
Strand 5
C
95 100anti-parallel
Strand 6
C
103 112anti-parallel
Strand 7
C
118 123anti-parallel
Strand 8
C
129 135anti-parallel
Strand 9
C
43 48anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
29 32first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
51 57anti-parallel
Strand 4
D
38 41anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il